Wall clock time and date at job start Tue Mar 31 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46815 * 2 1 4 4 C 1.50696 * 109.47404 * 240.00426 * 2 1 3 5 5 H 1.08000 * 119.99871 * 239.99740 * 4 2 1 6 6 C 1.37873 * 120.00534 * 59.99231 * 4 2 1 7 7 N 1.31519 * 119.99727 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00639 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46560 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47303 * 119.99964 * 8 6 4 11 11 H 1.48499 * 109.46961 * 240.00380 * 8 6 4 12 12 C 1.52998 * 109.47381 * 119.99837 * 2 1 3 13 13 N 1.46906 * 109.47020 * 300.00339 * 12 2 1 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 2 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 S 1.75874 * 125.20478 * 270.02537 * 15 14 13 17 17 C 1.75882 * 90.98115 * 179.97438 * 16 15 14 18 18 C 1.33398 * 109.60176 * 359.97438 * 17 16 15 19 19 C 1.33434 * 125.19590 * 89.72264 * 15 14 13 20 20 Br 1.89102 * 122.55191 * 0.03392 * 19 15 14 21 21 H 1.09002 * 109.47185 * 299.99381 * 1 2 3 22 22 H 1.08994 * 109.47063 * 60.00354 * 1 2 3 23 23 H 1.09008 * 109.46699 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46866 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46687 * 299.99989 * 3 2 1 26 26 H 1.09002 * 109.47213 * 60.00106 * 3 2 1 27 27 H 0.97001 * 120.00114 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47142 * 180.02562 * 12 2 1 29 29 H 1.09000 * 109.46991 * 60.00294 * 12 2 1 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 2 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 32 32 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 33 33 H 1.07994 * 125.19906 * 180.02562 * 17 16 15 34 34 H 1.08000 * 122.53942 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1467 -2.2867 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 6 2.0401 -0.7212 1.2492 13 7 1.5503 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5003 0.0422 4.8771 16 16 2.3236 1.3676 5.6887 17 6 1.0130 1.5088 6.8530 18 6 0.0748 0.5996 6.5833 19 6 0.3414 -0.2070 5.4898 20 35 -0.8443 -1.5620 4.9119 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7094 1.1618 -3.4844 28 1 3.1301 -0.7208 1.2494 29 1 1.6768 -1.7489 1.2492 30 1 0.5438 0.0414 2.4402 31 1 1.6572 -1.7224 3.6869 32 1 3.1109 -0.6953 3.6873 33 1 0.9734 2.2229 7.6622 34 1 -0.8261 0.5025 7.1709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:36 Heat of formation + Delta-G solvation = 29.909167 kcal Electronic energy + Delta-G solvation = -16643.123780 eV Core-core repulsion = 13941.727165 eV Total energy + Delta-G solvation = -2701.396615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.34903 -36.79597 -34.11271 -31.55449 -30.90024 -29.14666 -25.57832 -25.53056 -25.16330 -23.51828 -22.39464 -19.06251 -18.51458 -17.39730 -15.91003 -15.57539 -15.14224 -14.56000 -14.35519 -13.62854 -13.21054 -13.13733 -12.69729 -12.39938 -12.20278 -11.96056 -11.56502 -11.14254 -10.99933 -10.91494 -10.76693 -10.62509 -10.55716 -10.23563 -10.14857 -10.05422 -9.37292 -9.15107 -8.78291 -8.59523 -8.44910 -8.28046 -7.77512 -5.89939 -4.00317 0.77626 1.11673 1.69512 2.27133 2.36277 3.31343 3.39756 3.43127 4.44216 4.61110 4.89820 5.08491 5.15952 5.35700 5.56325 5.72023 5.76247 5.92384 6.10902 6.30908 6.38470 6.72454 6.90300 7.08759 7.18699 7.38673 7.45875 7.67520 7.77576 7.83462 7.90887 8.22185 8.35508 8.56712 9.01150 9.64699 11.10633 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.003992 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.737593 B = 7012.227372 C = 7783.652420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.505 4.505 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.677 5.677 14 C 0.115 3.885 15 C -0.127 4.127 16 S 0.164 5.836 17 C -0.223 4.223 18 C -0.114 4.114 19 C -0.116 4.116 20 Br -0.031 7.031 21 H 0.010 0.990 22 H 0.083 0.917 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.257 0.743 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.342 0.658 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.169 0.831 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -1.125 19.860 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.544 4.544 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.310 5.310 14 C -0.016 4.016 15 C -0.248 4.248 16 S 0.427 5.573 17 C -0.359 4.359 18 C -0.146 4.146 19 C -0.209 4.209 20 Br 0.052 6.948 21 H 0.029 0.971 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.162 0.838 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.186 0.814 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.556 -0.278 19.285 19.295 hybrid contribution -1.368 -1.656 -0.440 2.192 sum -1.924 -1.933 18.845 19.041 Atomic orbital electron populations 1.21832 0.98445 0.98435 1.00283 1.18095 0.92163 0.93061 0.89798 1.21645 0.97767 0.98183 1.00118 1.21130 1.31073 1.11791 0.90416 0.92925 1.24881 0.95056 0.94944 0.98682 1.69849 1.36891 1.22771 1.22787 0.86607 0.78591 0.79726 0.83448 1.19954 1.21183 1.21129 1.22204 0.99010 0.94632 0.89440 1.60743 1.17012 1.53051 1.00213 1.20543 1.00283 0.94425 0.86330 1.24645 0.97454 1.00961 1.01715 1.84441 1.21300 1.29935 1.21646 1.25609 0.99313 1.05499 1.05522 1.19881 1.01153 0.96027 0.97491 1.20715 0.96710 1.01965 1.01520 1.96705 1.60152 1.48169 1.89747 0.97092 0.89803 0.96159 0.96282 0.90710 0.96133 0.93258 0.92354 0.96501 0.83807 0.92990 0.89926 0.81379 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 4 C -0.51 -13.56 8.01 -34.44 -0.28 -13.84 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 C 0.08 1.56 4.59 -3.82 -0.02 1.54 16 13 N -0.68 -12.18 5.70 -115.05 -0.66 -12.84 16 14 C 0.12 1.72 5.82 -4.97 -0.03 1.69 16 15 C -0.13 -1.72 6.02 -35.98 -0.22 -1.94 16 16 S 0.16 1.89 23.33 -107.50 -2.51 -0.62 16 17 C -0.22 -2.22 11.23 29.04 0.33 -1.89 16 18 C -0.11 -1.26 10.04 -41.19 -0.41 -1.68 16 19 C -0.12 -1.51 6.17 -41.18 -0.25 -1.77 16 20 Br -0.03 -0.40 32.71 -68.01 -2.22 -2.63 16 21 H 0.01 0.23 6.57 -51.93 -0.34 -0.12 16 22 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 23 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 26 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.34 6.33 6.76 -39.29 -0.27 6.07 16 31 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -27.32 308.84 -10.22 -37.53 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.51 Total: 1.90 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.47 Total: -20.09 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.14 Total: -36.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.51 Total: -0.62 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.22 Total: -2.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.32 -10.22 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.442 kcal (2) G-P(sol) polarization free energy of solvation -27.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds