Wall clock time and date at job start Tue Mar 31 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46815 * 2 1 4 4 C 1.50696 * 109.47404 * 240.00426 * 2 1 3 5 5 H 1.08000 * 119.99871 * 239.99740 * 4 2 1 6 6 C 1.37873 * 120.00534 * 59.99231 * 4 2 1 7 7 N 1.31519 * 119.99727 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00639 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46560 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47303 * 119.99964 * 8 6 4 11 11 H 1.48499 * 109.46961 * 240.00380 * 8 6 4 12 12 C 1.52998 * 109.47381 * 119.99837 * 2 1 3 13 13 N 1.46906 * 109.47020 * 300.00339 * 12 2 1 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 2 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 S 1.75874 * 125.20478 * 270.02537 * 15 14 13 17 17 C 1.75882 * 90.98115 * 179.97438 * 16 15 14 18 18 C 1.33398 * 109.60176 * 359.97438 * 17 16 15 19 19 C 1.33434 * 125.19590 * 89.72264 * 15 14 13 20 20 Br 1.89102 * 122.55191 * 0.03392 * 19 15 14 21 21 H 1.09002 * 109.47185 * 299.99381 * 1 2 3 22 22 H 1.08994 * 109.47063 * 60.00354 * 1 2 3 23 23 H 1.09008 * 109.46699 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46866 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46687 * 299.99989 * 3 2 1 26 26 H 1.09002 * 109.47213 * 60.00106 * 3 2 1 27 27 H 0.97001 * 120.00114 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47142 * 180.02562 * 12 2 1 29 29 H 1.09000 * 109.46991 * 60.00294 * 12 2 1 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 2 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 32 32 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 33 33 H 1.07994 * 125.19906 * 180.02562 * 17 16 15 34 34 H 1.08000 * 122.53942 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1467 -2.2867 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 6 2.0401 -0.7212 1.2492 13 7 1.5503 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5003 0.0422 4.8771 16 16 2.3236 1.3676 5.6887 17 6 1.0130 1.5088 6.8530 18 6 0.0748 0.5996 6.5833 19 6 0.3414 -0.2070 5.4898 20 35 -0.8443 -1.5620 4.9119 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7094 1.1618 -3.4844 28 1 3.1301 -0.7208 1.2494 29 1 1.6768 -1.7489 1.2492 30 1 0.5438 0.0414 2.4402 31 1 1.6572 -1.7224 3.6869 32 1 3.1109 -0.6953 3.6873 33 1 0.9734 2.2229 7.6622 34 1 -0.8261 0.5025 7.1709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:36 Heat of formation + Delta-G solvation = 15.631164 kcal Electronic energy + Delta-G solvation = -16643.742920 eV Core-core repulsion = 13941.727165 eV Total energy + Delta-G solvation = -2702.015755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.40284 -38.38366 -35.69069 -33.19819 -32.07666 -30.40221 -27.50290 -27.24474 -26.76391 -24.89386 -23.52937 -20.36992 -19.98154 -18.51553 -17.78200 -16.83579 -16.45863 -16.23236 -15.75967 -15.08120 -14.53431 -14.35184 -14.01688 -13.88099 -13.78302 -13.26121 -13.10833 -12.94914 -12.66988 -12.48731 -12.42249 -12.11199 -12.05686 -11.79871 -11.71867 -11.31184 -11.20816 -10.98959 -10.58936 -10.33639 -9.73344 -9.35871 -9.22745 -7.95376 -6.12116 -0.14739 0.17293 0.85108 1.32114 1.42160 1.45566 1.48006 1.54854 2.47695 3.27042 3.41836 3.77462 4.06945 4.27321 4.48470 4.54908 4.66033 4.68844 4.85370 4.87858 5.02865 5.07690 5.17624 5.24229 5.29170 5.44012 5.54273 5.71576 5.77707 6.10117 6.21248 6.32803 6.46253 6.57278 6.97073 7.55510 9.03112 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.003992 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.737593 B = 7012.227372 C = 7783.652420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.060 3.940 3 C -0.105 4.105 4 C -0.523 4.523 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.090 3.910 13 N -0.678 5.678 14 C 0.120 3.880 15 C -0.157 4.157 16 S 0.168 5.832 17 C -0.201 4.201 18 C -0.130 4.130 19 C -0.116 4.116 20 Br -0.038 7.038 21 H 0.028 0.972 22 H 0.056 0.944 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.257 0.743 28 H 0.055 0.945 29 H 0.013 0.987 30 H 0.339 0.661 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.202 0.798 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -0.924 21.399 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 C -0.163 4.163 4 C -0.562 4.562 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.039 4.039 13 N -0.310 5.310 14 C -0.011 4.011 15 C -0.278 4.278 16 S 0.432 5.568 17 C -0.338 4.338 18 C -0.161 4.161 19 C -0.209 4.209 20 Br 0.045 6.955 21 H 0.047 0.953 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.219 0.781 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.427 -0.080 20.837 20.841 hybrid contribution -1.413 -1.675 -0.830 2.343 sum -1.840 -1.755 20.006 20.167 Atomic orbital electron populations 1.21656 0.98342 0.98006 0.99763 1.18139 0.92254 0.92946 0.90678 1.21469 0.97210 0.98328 0.99307 1.21441 1.31120 1.11854 0.91803 0.93548 1.25528 0.95344 0.95623 1.01157 1.69980 1.37508 1.23633 1.23180 0.85721 0.78038 0.78766 0.80345 1.19587 1.21003 1.20952 1.21863 0.98631 0.94059 0.89345 1.60651 1.16672 1.53212 1.00472 1.20464 1.00508 0.94451 0.85633 1.24503 0.98539 1.02630 1.02144 1.84425 1.21744 1.28827 1.21847 1.26025 0.97656 1.04987 1.05117 1.20090 1.02376 0.96183 0.97405 1.20956 0.96274 1.01804 1.01908 1.96700 1.60265 1.48582 1.89908 0.95270 0.92520 0.96452 0.96805 0.93330 0.94909 0.93369 0.92625 0.96926 0.84173 0.93065 0.89478 0.78074 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 2 C 0.06 2.92 0.57 -52.93 -0.03 2.89 16 3 C -0.11 -5.14 8.09 71.99 0.58 -4.56 16 4 C -0.52 -28.18 8.01 25.60 0.21 -27.98 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.02 1.22 5.15 84.65 0.44 1.65 16 7 N -0.90 -50.59 9.35 21.45 0.20 -50.39 16 8 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.09 3.68 4.59 86.30 0.40 4.07 16 13 N -0.68 -23.77 5.70 -517.91 -2.95 -26.72 16 14 C 0.12 3.47 5.82 85.56 0.50 3.97 16 15 C -0.16 -4.04 6.02 24.60 0.15 -3.90 16 16 S 0.17 3.51 23.33 -56.49 -1.32 2.20 16 17 C -0.20 -3.34 11.23 66.72 0.75 -2.59 16 18 C -0.13 -2.52 10.04 21.23 0.21 -2.31 16 19 C -0.12 -2.81 6.17 21.24 0.13 -2.68 16 20 Br -0.04 -0.94 32.71 -20.37 -0.67 -1.61 16 21 H 0.03 1.24 6.57 -2.39 -0.02 1.22 16 22 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 23 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 2.62 6.07 -2.39 -0.01 2.61 16 26 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 27 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.34 12.22 6.76 -89.70 -0.61 11.61 16 31 H 0.05 1.49 7.32 -2.39 -0.02 1.47 16 32 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -57.43 308.84 1.68 -55.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.50 Total: 11.95 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.90 Total: -36.58 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.75 Total: -77.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.32 Total: 2.20 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -0.67 Total: -1.61 kcal Total: -57.43 1.68 -55.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.372 kcal (2) G-P(sol) polarization free energy of solvation -57.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds