Wall clock time and date at job start Tue Mar 31 2020 11:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47137 * 85.41758 * 3 2 1 5 5 C 1.36933 * 119.99808 * 274.99887 * 4 3 2 6 6 H 1.08003 * 119.99988 * 184.43917 * 5 4 3 7 7 C 1.38813 * 120.00248 * 4.44569 * 5 4 3 8 8 N 1.31618 * 120.00130 * 25.68733 * 7 5 4 9 9 Si 1.86802 * 120.00061 * 205.68911 * 7 5 4 10 10 H 1.48502 * 109.47291 * 59.99412 * 9 7 5 11 11 H 1.48498 * 109.47198 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47039 * 299.99908 * 9 7 5 13 13 S 1.65598 * 119.99986 * 95.00157 * 4 3 2 14 14 O 1.42101 * 106.40204 * 342.71205 * 13 4 3 15 15 O 1.42099 * 106.40331 * 209.78645 * 13 4 3 16 16 C 1.76200 * 107.21761 * 96.24703 * 13 4 3 17 17 C 1.38234 * 119.99662 * 115.22809 * 16 13 4 18 18 C 1.38205 * 120.03596 * 180.23316 * 17 16 13 19 19 C 1.38386 * 120.03820 * 359.79232 * 18 17 16 20 20 Cl 1.73598 * 120.00167 * 180.02562 * 19 18 17 21 21 C 1.38289 * 119.99967 * 359.97438 * 19 18 17 22 22 C 1.38445 * 120.00227 * 295.00502 * 16 13 4 23 23 F 1.35101 * 120.01812 * 0.02562 * 22 16 13 24 24 H 4.40637 * 5.51453 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46968 * 325.41662 * 3 2 1 26 26 H 1.08994 * 109.47306 * 205.42029 * 3 2 1 27 27 H 0.96999 * 119.99799 * 180.02562 * 8 7 5 28 28 H 1.07995 * 119.98038 * 359.97438 * 17 16 13 29 29 H 1.07997 * 119.98403 * 179.77145 * 18 17 16 30 30 H 1.08002 * 120.01944 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1095 -1.3768 5 6 3.2657 -1.3414 -1.9602 6 1 3.6929 -1.4281 -2.9484 7 6 2.8498 -2.4786 -1.2816 8 7 1.9111 -2.3906 -0.3632 9 14 3.6224 -4.1340 -1.6717 10 1 5.0827 -4.0731 -1.4086 11 1 3.0088 -5.1808 -0.8155 12 1 3.3903 -4.4641 -3.1009 13 16 3.5277 1.2558 -2.2275 14 8 2.9199 2.3434 -1.5442 15 8 3.2801 0.9614 -3.5955 16 6 5.2683 1.4824 -2.0745 17 6 6.0778 1.3925 -3.1914 18 6 7.4438 1.5653 -3.0715 19 6 8.0022 1.8328 -1.8338 20 17 9.7180 2.0504 -1.6844 21 6 7.1932 1.9278 -0.7163 22 6 5.8247 1.7550 -0.8364 23 9 5.0334 1.8468 0.2548 24 1 -1.0499 0.0002 -0.0001 25 1 3.0097 -0.8453 0.5833 26 1 3.0089 0.9289 0.4411 27 1 1.6208 -3.1853 0.1112 28 1 5.6431 1.1830 -4.1575 29 1 8.0758 1.4913 -3.9440 30 1 7.6287 2.1369 0.2497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490841290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:13 Heat of formation + Delta-G solvation = -15.357131 kcal Electronic energy + Delta-G solvation = -22335.061245 eV Core-core repulsion = 18586.836022 eV Total energy + Delta-G solvation = -3748.225222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.008 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -48.97517 -38.96757 -36.64811 -36.35138 -36.15774 -34.81495 -31.92240 -31.15648 -31.08965 -30.45834 -26.57273 -23.94967 -23.28159 -22.88043 -18.78693 -18.35037 -17.92639 -17.26073 -16.79197 -16.39361 -16.22112 -15.56770 -15.24979 -14.67627 -14.39540 -14.16498 -13.67300 -13.49356 -13.33866 -13.33376 -12.68543 -12.44666 -11.83682 -11.73837 -11.53652 -11.34390 -11.22275 -11.07523 -11.00206 -10.95779 -10.62620 -10.35630 -10.26594 -9.71144 -9.19900 -9.11955 -8.84210 -8.77977 -8.31913 -6.50800 -3.93571 0.64244 1.08809 1.27449 1.80964 3.12366 3.17610 3.18987 3.25145 3.76685 4.07278 4.18589 4.29250 4.43748 4.54639 4.62753 4.81241 4.91530 5.14542 5.41976 5.47133 5.67984 5.68498 5.93245 5.97579 6.07887 6.16228 6.66401 6.73934 6.96792 7.22520 7.32939 8.15337 8.65697 9.00513 9.04017 10.43074 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005658 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.774533 B = 4947.812108 C = 5700.868386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.093 4.093 3 C 0.240 3.760 4 N -0.814 5.814 5 C -0.298 4.298 6 H 0.116 0.884 7 C 0.048 3.952 8 N -0.821 5.821 9 Si 0.905 3.095 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.597 3.403 14 O -0.972 6.972 15 O -0.963 6.963 16 C -0.698 4.698 17 C 0.011 3.989 18 C -0.146 4.146 19 C 0.024 3.976 20 Cl -0.062 7.062 21 C -0.171 4.171 22 C 0.204 3.796 23 F -0.117 7.117 24 H 0.199 0.801 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.275 0.725 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 4.311 0.018 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.096 4.096 3 C 0.115 3.885 4 N -0.643 5.643 5 C -0.437 4.437 6 H 0.134 0.866 7 C -0.163 4.163 8 N -0.458 5.458 9 Si 0.730 3.270 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.194 1.194 13 S 2.686 3.314 14 O -0.961 6.961 15 O -0.952 6.952 16 C -0.775 4.775 17 C -0.008 4.008 18 C -0.165 4.165 19 C -0.003 4.003 20 Cl -0.033 7.033 21 C -0.191 4.191 22 C 0.183 3.817 23 F -0.095 7.095 24 H 0.216 0.784 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.775 4.970 -0.277 10.969 hybrid contribution 0.997 -1.170 0.384 1.584 sum 10.772 3.799 0.107 11.423 Atomic orbital electron populations 1.24178 0.95281 1.07552 1.01614 1.22794 0.93971 0.94377 0.98478 1.17981 0.85019 1.01189 0.84299 1.53834 1.65614 1.21297 1.23514 1.19458 1.41052 0.82285 1.00879 0.86607 1.25219 0.95105 0.99589 0.96388 1.70210 1.20897 1.30802 1.23933 0.86347 0.80020 0.81571 0.79082 1.19646 1.20712 1.19439 1.07519 0.75562 0.73695 0.74592 1.93479 1.75099 1.52804 1.74760 1.93433 1.84198 1.84514 1.33077 1.32661 1.34274 1.13407 0.97128 1.20844 0.91872 0.90007 0.98064 1.21228 0.95748 1.03237 0.96309 1.20745 0.84851 0.99985 0.94726 1.98378 1.11329 1.95281 1.98263 1.20957 0.91798 1.06729 0.99647 1.16806 0.87698 0.94997 0.82198 1.91581 1.73257 1.92658 1.51973 0.78425 0.87827 0.90866 0.91410 0.82513 0.83931 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.91 19.25 29.55 0.57 -5.34 16 2 C -0.09 -2.23 11.21 -37.12 -0.42 -2.65 16 3 C 0.24 5.50 5.05 -6.83 -0.03 5.46 16 4 N -0.81 -19.24 2.89 -62.77 -0.18 -19.42 16 5 C -0.30 -7.26 9.38 -15.06 -0.14 -7.40 16 6 H 0.12 2.74 7.53 -52.48 -0.40 2.35 16 7 C 0.05 1.15 4.95 -17.43 -0.09 1.06 16 8 N -0.82 -20.09 8.88 55.49 0.49 -19.59 16 9 Si 0.90 18.42 29.62 -169.99 -5.04 13.39 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 S 2.60 58.15 5.26 -107.50 -0.57 57.58 16 14 O -0.97 -23.39 16.20 -57.17 -0.93 -24.32 16 15 O -0.96 -23.04 16.02 -57.17 -0.92 -23.95 16 16 C -0.70 -13.04 5.91 -39.51 -0.23 -13.27 16 17 C 0.01 0.18 9.55 -39.60 -0.38 -0.20 16 18 C -0.15 -1.94 9.83 -39.54 -0.39 -2.33 16 19 C 0.02 0.32 6.32 -39.51 -0.25 0.07 16 20 Cl -0.06 -0.69 28.96 -51.86 -1.50 -2.19 16 21 C -0.17 -2.48 9.81 -39.48 -0.39 -2.87 16 22 C 0.20 3.56 7.21 -39.42 -0.28 3.28 16 23 F -0.12 -2.12 14.42 2.25 0.03 -2.09 16 24 H 0.20 3.56 7.80 -54.09 -0.42 3.13 16 25 H 0.10 2.37 6.40 -51.93 -0.33 2.04 16 26 H 0.07 1.55 5.64 -51.93 -0.29 1.26 16 27 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 28 H 0.16 2.30 7.33 -52.49 -0.38 1.91 16 29 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -28.71 301.14 -7.90 -36.61 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -1.81 Total: 3.62 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.03 Total: -24.18 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -1.84 Total: -48.27 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.39 kcal Atomic # 16 Polarization: 58.15 SS G_CDS: -0.57 Total: 57.58 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.71 -7.90 -36.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.250 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds