Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47137 * 85.41758 * 3 2 1 5 5 C 1.36933 * 119.99808 * 274.99887 * 4 3 2 6 6 H 1.08003 * 119.99988 * 184.43917 * 5 4 3 7 7 C 1.38813 * 120.00248 * 4.44569 * 5 4 3 8 8 N 1.31618 * 120.00130 * 25.68733 * 7 5 4 9 9 Si 1.86802 * 120.00061 * 205.68911 * 7 5 4 10 10 H 1.48502 * 109.47291 * 59.99412 * 9 7 5 11 11 H 1.48498 * 109.47198 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47039 * 299.99908 * 9 7 5 13 13 S 1.65598 * 119.99986 * 95.00157 * 4 3 2 14 14 O 1.42101 * 106.40204 * 342.71205 * 13 4 3 15 15 O 1.42099 * 106.40331 * 209.78645 * 13 4 3 16 16 C 1.76200 * 107.21761 * 96.24703 * 13 4 3 17 17 C 1.38234 * 119.99662 * 115.22809 * 16 13 4 18 18 C 1.38205 * 120.03596 * 180.23316 * 17 16 13 19 19 C 1.38386 * 120.03820 * 359.79232 * 18 17 16 20 20 Cl 1.73598 * 120.00167 * 180.02562 * 19 18 17 21 21 C 1.38289 * 119.99967 * 359.97438 * 19 18 17 22 22 C 1.38445 * 120.00227 * 295.00502 * 16 13 4 23 23 F 1.35101 * 120.01812 * 0.02562 * 22 16 13 24 24 H 4.40637 * 5.51453 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46968 * 325.41662 * 3 2 1 26 26 H 1.08994 * 109.47306 * 205.42029 * 3 2 1 27 27 H 0.96999 * 119.99799 * 180.02562 * 8 7 5 28 28 H 1.07995 * 119.98038 * 359.97438 * 17 16 13 29 29 H 1.07997 * 119.98403 * 179.77145 * 18 17 16 30 30 H 1.08002 * 120.01944 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1095 -1.3768 5 6 3.2657 -1.3414 -1.9602 6 1 3.6929 -1.4281 -2.9484 7 6 2.8498 -2.4786 -1.2816 8 7 1.9111 -2.3906 -0.3632 9 14 3.6224 -4.1340 -1.6717 10 1 5.0827 -4.0731 -1.4086 11 1 3.0088 -5.1808 -0.8155 12 1 3.3903 -4.4641 -3.1009 13 16 3.5277 1.2558 -2.2275 14 8 2.9199 2.3434 -1.5442 15 8 3.2801 0.9614 -3.5955 16 6 5.2683 1.4824 -2.0745 17 6 6.0778 1.3925 -3.1914 18 6 7.4438 1.5653 -3.0715 19 6 8.0022 1.8328 -1.8338 20 17 9.7180 2.0504 -1.6844 21 6 7.1932 1.9278 -0.7163 22 6 5.8247 1.7550 -0.8364 23 9 5.0334 1.8468 0.2548 24 1 -1.0499 0.0002 -0.0001 25 1 3.0097 -0.8453 0.5833 26 1 3.0089 0.9289 0.4411 27 1 1.6208 -3.1853 0.1112 28 1 5.6431 1.1830 -4.1575 29 1 8.0758 1.4913 -3.9440 30 1 7.6287 2.1369 0.2497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490841290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = -32.783637 kcal Electronic energy + Delta-G solvation = -22335.816915 eV Core-core repulsion = 18586.836022 eV Total energy + Delta-G solvation = -3748.980892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.008 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -50.38478 -40.22124 -38.23528 -37.97925 -37.69155 -36.83454 -33.59976 -32.87402 -32.39284 -31.75565 -28.29505 -25.69353 -24.65938 -24.18158 -20.54289 -19.94308 -19.56492 -18.80593 -18.40206 -17.90452 -17.86517 -17.00090 -16.51157 -16.43390 -16.11898 -15.46743 -15.29497 -15.03381 -14.91196 -14.49697 -14.23838 -13.95503 -13.48079 -13.24597 -13.13244 -13.02084 -12.84956 -12.71624 -12.64150 -12.34196 -12.19558 -12.03359 -11.96245 -11.40790 -10.94696 -10.53912 -10.40426 -10.11896 -10.01094 -8.12202 -5.77059 -0.74317 -0.46184 -0.13653 0.72207 1.49600 1.51882 1.58663 1.86263 2.12772 2.39472 2.50417 2.66989 2.77431 2.90046 3.12345 3.25619 3.60028 3.79539 3.99173 4.03081 4.24525 4.35977 4.41339 4.69611 4.74018 4.83550 4.97918 5.25410 5.40703 5.52755 5.65145 6.43187 7.01244 7.25274 7.34898 8.84198 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005658 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.774533 B = 4947.812108 C = 5700.868386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.139 4.139 3 C 0.251 3.749 4 N -0.851 5.851 5 C -0.353 4.353 6 H 0.108 0.892 7 C 0.009 3.991 8 N -0.875 5.875 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.669 3.331 14 O -0.990 6.990 15 O -0.981 6.981 16 C -0.717 4.717 17 C 0.009 3.991 18 C -0.129 4.129 19 C 0.035 3.965 20 Cl -0.028 7.028 21 C -0.163 4.163 22 C 0.188 3.812 23 F -0.126 7.126 24 H 0.232 0.768 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.266 0.734 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.584 5.971 -0.880 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.683 5.683 5 C -0.482 4.482 6 H 0.126 0.874 7 C -0.196 4.196 8 N -0.513 5.513 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.761 3.239 14 O -0.980 6.980 15 O -0.971 6.971 16 C -0.803 4.803 17 C -0.011 4.011 18 C -0.149 4.149 19 C 0.008 3.992 20 Cl 0.001 6.999 21 C -0.183 4.183 22 C 0.167 3.833 23 F -0.104 7.104 24 H 0.249 0.751 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.186 0.814 29 H 0.201 0.799 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.113 6.455 -1.169 14.662 hybrid contribution 0.308 -1.109 0.477 1.246 sum 13.421 5.346 -0.693 14.463 Atomic orbital electron populations 1.25091 0.96399 1.06400 1.00391 1.23577 0.95304 0.95546 0.99762 1.17980 0.84624 1.01085 0.83780 1.52989 1.72609 1.19807 1.22845 1.19331 1.43804 0.82436 1.02665 0.87405 1.25727 0.95250 1.01662 0.96960 1.70312 1.23740 1.30425 1.26852 0.85448 0.79193 0.78270 0.78174 1.19094 1.21125 1.19817 1.02493 0.75682 0.72491 0.73267 1.93497 1.75907 1.53316 1.75301 1.93449 1.84928 1.84870 1.33849 1.31493 1.29859 1.19263 0.99721 1.21087 0.93180 0.89439 0.97371 1.21586 0.94660 1.00816 0.97795 1.20980 0.86499 0.97380 0.94364 1.98409 1.08464 1.94809 1.98187 1.21225 0.90244 1.05270 1.01521 1.17040 0.89107 0.95788 0.81334 1.91566 1.73740 1.92809 1.52259 0.75115 0.88396 0.90087 0.92348 0.81409 0.79864 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.99 19.25 74.32 1.43 -10.56 16 2 C -0.14 -6.96 11.21 31.13 0.35 -6.61 16 3 C 0.25 12.03 5.05 84.57 0.43 12.46 16 4 N -0.85 -41.65 2.89 -352.51 -1.02 -42.67 16 5 C -0.35 -18.04 9.38 84.03 0.79 -17.26 16 6 H 0.11 5.38 7.53 -2.91 -0.02 5.36 16 7 C 0.01 0.43 4.95 84.86 0.42 0.85 16 8 N -0.88 -45.79 8.88 21.65 0.19 -45.60 16 9 Si 0.96 39.96 29.62 68.60 2.03 41.99 16 10 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 11 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 S 2.67 119.46 5.26 -56.49 -0.30 119.16 16 14 O -0.99 -47.48 16.20 -128.00 -2.07 -49.56 16 15 O -0.98 -46.82 16.02 -128.00 -2.05 -48.87 16 16 C -0.72 -25.48 5.91 22.32 0.13 -25.34 16 17 C 0.01 0.24 9.55 22.26 0.21 0.46 16 18 C -0.13 -2.79 9.83 22.30 0.22 -2.57 16 19 C 0.04 0.77 6.32 22.32 0.14 0.91 16 20 Cl -0.03 -0.48 28.96 -2.72 -0.08 -0.56 16 21 C -0.16 -4.05 9.81 22.34 0.22 -3.84 16 22 C 0.19 6.17 7.21 22.37 0.16 6.33 16 23 F -0.13 -4.45 14.42 44.97 0.65 -3.80 16 24 H 0.23 8.28 7.80 -4.42 -0.03 8.25 16 25 H 0.10 4.81 6.40 -2.38 -0.02 4.80 16 26 H 0.08 3.57 5.64 -2.39 -0.01 3.56 16 27 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.17 4.41 7.33 -2.91 -0.02 4.39 16 29 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.18 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.70 301.14 3.05 -61.64 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.20 Total: 13.43 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 4.50 Total: -45.17 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.83 Total: -88.27 kcal Atomic # 8 Polarization: -94.31 SS G_CDS: -4.12 Total: -98.43 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.65 Total: -3.80 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 16 Polarization: 119.46 SS G_CDS: -0.30 Total: 119.16 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -64.70 3.05 -61.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.860 kcal (2) G-P(sol) polarization free energy of solvation -64.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds