Wall clock time and date at job start Tue Mar 31 2020 11:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46982 * 113.06343 * 3 2 1 5 5 C 1.36936 * 119.99755 * 273.18967 * 4 3 2 6 6 H 1.08000 * 119.99896 * 186.91980 * 5 4 3 7 7 C 1.38814 * 120.00600 * 6.90785 * 5 4 3 8 8 N 1.31623 * 119.99275 * 25.08939 * 7 5 4 9 9 Si 1.86794 * 120.00672 * 205.08501 * 7 5 4 10 10 H 1.48505 * 109.46572 * 60.00277 * 9 7 5 11 11 H 1.48500 * 109.47272 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47279 * 300.00822 * 9 7 5 13 13 S 1.65596 * 120.00072 * 93.18191 * 4 3 2 14 14 O 1.42098 * 106.40144 * 23.54387 * 13 4 3 15 15 O 1.42106 * 106.40150 * 156.46254 * 13 4 3 16 16 C 1.76200 * 107.22273 * 270.00246 * 13 4 3 17 17 C 1.38203 * 120.00734 * 114.72317 * 16 13 4 18 18 C 1.38331 * 120.01422 * 179.77212 * 17 16 13 19 19 Cl 1.73602 * 119.99193 * 180.25116 * 18 17 16 20 20 C 1.38380 * 120.02303 * 0.50743 * 18 17 16 21 21 C 1.38172 * 120.01094 * 359.74526 * 20 18 17 22 22 C 1.38437 * 120.00370 * 295.00186 * 16 13 4 23 23 F 1.35099 * 120.01096 * 359.97438 * 22 16 13 24 24 H 4.40645 * 5.51334 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47377 * 353.06419 * 3 2 1 26 26 H 1.08997 * 109.47489 * 233.06085 * 3 2 1 27 27 H 0.96999 * 120.00143 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.99467 * 0.02562 * 17 16 13 29 29 H 1.07996 * 119.99646 * 179.72583 * 20 18 17 30 30 H 1.07996 * 120.00514 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5420 -1.2709 5 6 3.3004 -0.2859 -2.3488 6 1 3.7641 0.0874 -3.2499 7 6 2.8732 -1.6051 -2.2835 8 7 1.9090 -1.9441 -1.4542 9 14 3.6666 -2.8989 -3.3724 10 1 5.1187 -2.9767 -3.0709 11 1 3.0355 -4.2181 -3.1139 12 1 3.4762 -2.5304 -4.7982 13 16 3.4843 2.1550 -1.4038 14 8 3.7537 2.6169 -0.0872 15 8 4.4099 2.2777 -2.4751 16 6 2.0102 2.9678 -1.9243 17 6 1.3873 3.8731 -1.0862 18 6 0.2326 4.5149 -1.4965 19 17 -0.5458 5.6567 -0.4459 20 6 -0.3052 4.2430 -2.7422 21 6 0.3138 3.3342 -3.5789 22 6 1.4727 2.6955 -3.1706 23 9 2.0784 1.8068 -3.9882 24 1 -1.0501 0.0001 0.0003 25 1 3.0098 -1.0193 0.1241 26 1 3.0091 0.6184 0.8213 27 1 1.6102 -2.8658 -1.4087 28 1 1.8043 4.0826 -0.1122 29 1 -1.2092 4.7410 -3.0604 30 1 -0.1062 3.1218 -4.5509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491072860.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:19 Heat of formation + Delta-G solvation = -20.902534 kcal Electronic energy + Delta-G solvation = -22672.472457 eV Core-core repulsion = 18924.006768 eV Total energy + Delta-G solvation = -3748.465689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.008 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.50471 -38.68321 -36.46535 -36.26179 -35.84855 -34.46249 -32.18006 -31.26750 -31.07986 -29.87603 -26.71607 -24.00083 -23.18611 -22.42201 -18.72284 -18.21681 -17.80207 -16.91862 -16.62732 -16.42413 -16.08559 -15.18676 -14.88786 -14.71436 -14.41396 -13.93313 -13.49698 -13.40501 -13.14798 -13.06707 -12.52007 -12.46510 -11.96062 -11.50664 -11.31866 -11.14462 -11.05614 -11.01065 -10.88100 -10.77582 -10.52292 -10.38375 -10.01767 -9.71795 -9.36169 -9.14958 -8.90658 -8.45600 -8.33399 -6.77719 -4.07447 1.00455 1.28085 1.57931 2.21729 3.02979 3.06910 3.14321 3.49296 3.70862 3.89873 4.09071 4.45334 4.47265 4.56073 4.78516 4.95133 5.10590 5.41616 5.49007 5.58389 5.76326 5.99767 6.10871 6.18309 6.23862 6.32314 6.63378 6.88673 6.94001 7.03695 7.11547 8.02827 8.37879 8.80674 8.83953 10.11938 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.005785 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.406951 B = 4838.530911 C = 4935.766265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.115 4.115 3 C 0.231 3.769 4 N -0.779 5.779 5 C -0.217 4.217 6 H 0.130 0.870 7 C 0.026 3.974 8 N -0.804 5.804 9 Si 0.936 3.064 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.265 1.265 13 S 2.490 3.510 14 O -0.996 6.996 15 O -0.975 6.975 16 C -0.680 4.680 17 C 0.001 3.999 18 C -0.074 4.074 19 Cl -0.076 7.076 20 C -0.057 4.057 21 C -0.170 4.170 22 C 0.201 3.799 23 F -0.111 7.111 24 H 0.196 0.804 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.281 0.719 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 4.055 -0.675 6.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.117 4.117 3 C 0.106 3.894 4 N -0.599 5.599 5 C -0.369 4.369 6 H 0.147 0.853 7 C -0.189 4.189 8 N -0.442 5.442 9 Si 0.760 3.240 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.190 1.190 13 S 2.587 3.413 14 O -0.985 6.985 15 O -0.964 6.964 16 C -0.754 4.754 17 C -0.019 4.019 18 C -0.101 4.101 19 Cl -0.047 7.047 20 C -0.076 4.076 21 C -0.190 4.190 22 C 0.180 3.820 23 F -0.089 7.089 24 H 0.213 0.787 25 H 0.135 0.865 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.433 4.784 -0.298 6.529 hybrid contribution -1.193 -0.497 -0.873 1.560 sum -5.626 4.286 -1.171 7.169 Atomic orbital electron populations 1.24209 0.95304 1.05403 1.03264 1.23348 0.94533 0.96310 0.97544 1.18587 0.83961 1.01557 0.85295 1.55986 1.69752 1.19524 1.14606 1.20459 1.28463 0.89634 0.98337 0.85284 1.25777 0.95179 0.99729 0.98176 1.70239 1.20421 1.20286 1.33274 0.85803 0.79902 0.78294 0.79977 1.18847 1.20430 1.18997 1.14400 0.79286 0.74247 0.73383 1.93312 1.85776 1.81269 1.38167 1.93366 1.61950 1.85899 1.55223 1.32782 1.29844 1.12080 1.00722 1.20672 0.91385 0.90895 0.98946 1.21003 0.97340 0.98278 0.93454 1.98341 1.80516 1.59546 1.66336 1.20877 0.99017 0.96094 0.91636 1.21114 0.96319 0.99791 1.01749 1.17120 0.90653 0.87138 0.87108 1.91632 1.81954 1.64471 1.70866 0.78668 0.86479 0.89719 0.90816 0.83301 0.84374 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 19.25 29.55 0.57 -4.76 16 2 C -0.11 -2.50 11.24 -37.12 -0.42 -2.91 16 3 C 0.23 4.99 5.45 -6.83 -0.04 4.95 16 4 N -0.78 -18.01 2.88 -62.77 -0.18 -18.19 16 5 C -0.22 -5.08 8.42 -15.06 -0.13 -5.21 16 6 H 0.13 3.07 6.81 -52.49 -0.36 2.71 16 7 C 0.03 0.58 4.92 -17.43 -0.09 0.49 16 8 N -0.80 -18.04 8.96 55.49 0.50 -17.54 16 9 Si 0.94 17.53 29.62 -169.99 -5.04 12.50 16 10 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 11 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 13 S 2.49 58.30 5.30 -107.50 -0.57 57.73 16 14 O -1.00 -23.99 15.54 -57.17 -0.89 -24.87 16 15 O -0.98 -25.05 16.21 -57.17 -0.93 -25.97 16 16 C -0.68 -14.38 5.91 -39.52 -0.23 -14.61 16 17 C 0.00 0.01 9.33 -39.56 -0.37 -0.36 16 18 C -0.07 -1.21 6.32 -39.49 -0.25 -1.46 16 19 Cl -0.08 -1.07 28.96 -51.86 -1.50 -2.57 16 20 C -0.06 -0.85 9.83 -39.55 -0.39 -1.24 16 21 C -0.17 -2.76 10.03 -39.52 -0.40 -3.16 16 22 C 0.20 4.04 7.21 -39.42 -0.28 3.76 16 23 F -0.11 -2.39 14.78 2.25 0.03 -2.36 16 24 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 25 H 0.12 2.50 6.42 -51.93 -0.33 2.16 16 26 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16 27 H 0.28 5.95 8.31 -40.82 -0.34 5.61 16 28 H 0.15 2.76 7.33 -52.49 -0.38 2.38 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -27.54 301.22 -7.89 -35.43 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -1.84 Total: 5.82 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -2.02 Total: -24.50 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.32 Total: -35.73 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -1.81 Total: -50.85 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.04 Total: 12.50 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.57 Total: 57.73 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.54 -7.89 -35.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491072860.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.527 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds