Wall clock time and date at job start Tue Mar 31 2020 11:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46982 * 113.06343 * 3 2 1 5 5 C 1.36936 * 119.99755 * 273.18967 * 4 3 2 6 6 H 1.08000 * 119.99896 * 186.91980 * 5 4 3 7 7 C 1.38814 * 120.00600 * 6.90785 * 5 4 3 8 8 N 1.31623 * 119.99275 * 25.08939 * 7 5 4 9 9 Si 1.86794 * 120.00672 * 205.08501 * 7 5 4 10 10 H 1.48505 * 109.46572 * 60.00277 * 9 7 5 11 11 H 1.48500 * 109.47272 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47279 * 300.00822 * 9 7 5 13 13 S 1.65596 * 120.00072 * 93.18191 * 4 3 2 14 14 O 1.42098 * 106.40144 * 23.54387 * 13 4 3 15 15 O 1.42106 * 106.40150 * 156.46254 * 13 4 3 16 16 C 1.76200 * 107.22273 * 270.00246 * 13 4 3 17 17 C 1.38203 * 120.00734 * 114.72317 * 16 13 4 18 18 C 1.38331 * 120.01422 * 179.77212 * 17 16 13 19 19 Cl 1.73602 * 119.99193 * 180.25116 * 18 17 16 20 20 C 1.38380 * 120.02303 * 0.50743 * 18 17 16 21 21 C 1.38172 * 120.01094 * 359.74526 * 20 18 17 22 22 C 1.38437 * 120.00370 * 295.00186 * 16 13 4 23 23 F 1.35099 * 120.01096 * 359.97438 * 22 16 13 24 24 H 4.40645 * 5.51334 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47377 * 353.06419 * 3 2 1 26 26 H 1.08997 * 109.47489 * 233.06085 * 3 2 1 27 27 H 0.96999 * 120.00143 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.99467 * 0.02562 * 17 16 13 29 29 H 1.07996 * 119.99646 * 179.72583 * 20 18 17 30 30 H 1.07996 * 120.00514 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5420 -1.2709 5 6 3.3004 -0.2859 -2.3488 6 1 3.7641 0.0874 -3.2499 7 6 2.8732 -1.6051 -2.2835 8 7 1.9090 -1.9441 -1.4542 9 14 3.6666 -2.8989 -3.3724 10 1 5.1187 -2.9767 -3.0709 11 1 3.0355 -4.2181 -3.1139 12 1 3.4762 -2.5304 -4.7982 13 16 3.4843 2.1550 -1.4038 14 8 3.7537 2.6169 -0.0872 15 8 4.4099 2.2777 -2.4751 16 6 2.0102 2.9678 -1.9243 17 6 1.3873 3.8731 -1.0862 18 6 0.2326 4.5149 -1.4965 19 17 -0.5458 5.6567 -0.4459 20 6 -0.3052 4.2430 -2.7422 21 6 0.3138 3.3342 -3.5789 22 6 1.4727 2.6955 -3.1706 23 9 2.0784 1.8068 -3.9882 24 1 -1.0501 0.0001 0.0003 25 1 3.0098 -1.0193 0.1241 26 1 3.0091 0.6184 0.8213 27 1 1.6102 -2.8658 -1.4087 28 1 1.8043 4.0826 -0.1122 29 1 -1.2092 4.7410 -3.0604 30 1 -0.1062 3.1218 -4.5509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491072860.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:18 Heat of formation + Delta-G solvation = -36.793495 kcal Electronic energy + Delta-G solvation = -22673.161541 eV Core-core repulsion = 18924.006768 eV Total energy + Delta-G solvation = -3749.154773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.008 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05475 -40.03820 -38.17520 -37.73353 -37.49031 -36.36773 -33.87113 -32.94356 -32.46550 -31.25670 -28.41487 -25.72205 -24.59359 -23.82659 -20.44608 -19.84041 -19.40045 -18.57728 -18.26752 -17.93348 -17.65631 -16.73558 -16.41433 -16.32777 -16.11185 -15.32074 -15.22586 -15.01933 -14.60288 -14.40626 -14.20047 -13.79145 -13.59769 -13.12027 -12.91969 -12.71820 -12.66595 -12.58701 -12.44800 -12.30231 -12.25942 -12.00246 -11.66183 -11.33243 -10.99911 -10.65480 -10.45943 -10.14940 -9.71633 -8.46352 -5.84843 -0.43161 -0.15426 -0.08481 0.94751 1.50976 1.56599 1.65232 1.96519 2.19678 2.31769 2.44701 2.75566 2.82274 3.08728 3.17844 3.51985 3.78250 3.92125 3.93279 4.17131 4.33299 4.51026 4.60999 4.81039 4.85400 4.89881 4.93018 5.19899 5.36075 5.46340 5.55534 6.28481 6.62975 7.08316 7.19890 8.43377 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.005785 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.406951 B = 4838.530911 C = 4935.766265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.150 4.150 3 C 0.231 3.769 4 N -0.786 5.786 5 C -0.240 4.240 6 H 0.117 0.883 7 C 0.002 3.998 8 N -0.816 5.816 9 Si 0.992 3.008 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.266 1.266 13 S 2.494 3.506 14 O -1.013 7.013 15 O -1.008 7.008 16 C -0.705 4.705 17 C -0.015 4.015 18 C -0.072 4.072 19 Cl -0.051 7.051 20 C -0.038 4.038 21 C -0.159 4.159 22 C 0.169 3.831 23 F -0.128 7.128 24 H 0.228 0.772 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.286 0.714 28 H 0.143 0.857 29 H 0.185 0.815 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 4.345 -1.366 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.152 4.152 3 C 0.107 3.893 4 N -0.606 5.606 5 C -0.392 4.392 6 H 0.134 0.866 7 C -0.211 4.211 8 N -0.454 5.454 9 Si 0.814 3.186 10 H -0.188 1.188 11 H -0.193 1.193 12 H -0.191 1.191 13 S 2.596 3.404 14 O -1.003 7.003 15 O -0.998 6.998 16 C -0.784 4.784 17 C -0.035 4.035 18 C -0.099 4.099 19 Cl -0.022 7.022 20 C -0.057 4.057 21 C -0.178 4.178 22 C 0.149 3.851 23 F -0.106 7.106 24 H 0.245 0.755 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.161 0.839 29 H 0.203 0.797 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.851 5.063 -0.957 8.572 hybrid contribution -0.587 -0.444 -0.613 0.958 sum -7.438 4.618 -1.570 8.895 Atomic orbital electron populations 1.24978 0.96159 1.03922 1.01746 1.23543 0.95028 0.97702 0.98953 1.18574 0.84561 1.01346 0.84863 1.55875 1.70571 1.19135 1.14992 1.20487 1.29851 0.90461 0.98423 0.86589 1.26428 0.95174 1.00419 0.99120 1.70294 1.20633 1.20849 1.33588 0.84982 0.79026 0.76336 0.78272 1.18815 1.19302 1.19112 1.14034 0.79332 0.74521 0.72550 1.93265 1.86424 1.81780 1.38842 1.93305 1.63767 1.86553 1.56175 1.32331 1.29657 1.14077 1.02315 1.20692 0.92757 0.91416 0.98647 1.21126 0.96446 0.97925 0.94422 1.98354 1.79719 1.58363 1.65765 1.21411 0.99572 0.94545 0.90135 1.21533 0.94448 0.98547 1.03256 1.17547 0.92396 0.88178 0.87022 1.91584 1.82583 1.65305 1.71178 0.75536 0.86727 0.89373 0.90320 0.83906 0.79736 0.80491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.77 19.25 74.32 1.43 -8.34 16 2 C -0.15 -6.51 11.24 31.12 0.35 -6.16 16 3 C 0.23 10.26 5.45 84.57 0.46 10.72 16 4 N -0.79 -37.57 2.88 -352.52 -1.02 -38.58 16 5 C -0.24 -11.58 8.42 84.03 0.71 -10.88 16 6 H 0.12 5.78 6.81 -2.91 -0.02 5.76 16 7 C 0.00 0.08 4.92 84.86 0.42 0.50 16 8 N -0.82 -36.41 8.96 21.65 0.19 -36.22 16 9 Si 0.99 35.65 29.62 68.60 2.03 37.68 16 10 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 11 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 12 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 13 S 2.49 121.55 5.30 -56.49 -0.30 121.25 16 14 O -1.01 -50.82 15.54 -128.00 -1.99 -52.80 16 15 O -1.01 -54.33 16.21 -128.00 -2.07 -56.40 16 16 C -0.71 -30.21 5.91 22.31 0.13 -30.08 16 17 C -0.02 -0.58 9.33 22.28 0.21 -0.37 16 18 C -0.07 -2.17 6.32 22.33 0.14 -2.03 16 19 Cl -0.05 -1.29 28.96 -2.72 -0.08 -1.36 16 20 C -0.04 -0.98 9.83 22.29 0.22 -0.76 16 21 C -0.16 -4.69 10.03 22.31 0.22 -4.47 16 22 C 0.17 6.76 7.21 22.37 0.16 6.92 16 23 F -0.13 -5.63 14.78 44.97 0.66 -4.97 16 24 H 0.23 7.01 7.80 -4.41 -0.03 6.97 16 25 H 0.12 5.04 6.42 -2.39 -0.02 5.02 16 26 H 0.09 3.72 6.95 -2.39 -0.02 3.71 16 27 H 0.29 11.88 8.31 -92.71 -0.77 11.11 16 28 H 0.14 5.39 7.33 -2.91 -0.02 5.37 16 29 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -60.56 301.22 3.08 -57.48 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.20 Total: 18.85 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 4.45 Total: -44.93 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -0.82 Total: -74.80 kcal Atomic # 8 Polarization: -105.14 SS G_CDS: -4.06 Total: -109.21 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.66 Total: -4.97 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 16 Polarization: 121.55 SS G_CDS: -0.30 Total: 121.25 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -60.56 3.08 -57.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491072860.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.690 kcal (2) G-P(sol) polarization free energy of solvation -60.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds