Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99976 * 2 1 4 4 C 1.53001 * 109.46659 * 293.95396 * 3 2 1 5 5 N 1.46894 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.46854 * 110.99766 * 294.20556 * 5 4 3 7 7 C 1.53042 * 109.51983 * 174.16080 * 6 5 4 8 8 C 1.53116 * 109.27832 * 59.18369 * 7 6 5 9 9 C 1.53004 * 109.57142 * 182.40886 * 8 7 6 10 10 C 1.50706 * 109.46921 * 294.70891 * 9 8 7 11 11 H 1.08002 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00006 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99746 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47082 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47208 * 120.00299 * 14 12 10 17 17 H 1.48507 * 109.47114 * 240.00377 * 14 12 10 18 18 C 1.53122 * 109.16091 * 302.33997 * 8 7 6 19 19 C 1.46848 * 111.00296 * 169.99957 * 5 4 3 20 20 C 1.46904 * 110.99956 * 123.94754 * 2 1 3 21 21 C 1.50701 * 109.46874 * 66.05008 * 20 2 1 22 22 C 1.38235 * 119.99808 * 89.99842 * 21 20 2 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38232 * 120.00069 * 0.09581 * 23 22 21 25 25 C 1.38234 * 119.99866 * 359.86117 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97587 * 21 20 2 27 27 H 1.09000 * 109.46969 * 296.04518 * 1 2 3 28 28 H 1.08994 * 109.47017 * 56.05102 * 1 2 3 29 29 H 1.09004 * 109.46520 * 176.05153 * 1 2 3 30 30 H 1.08995 * 109.46912 * 53.94682 * 3 2 1 31 31 H 1.09000 * 109.47117 * 173.95636 * 3 2 1 32 32 H 1.09008 * 109.46974 * 299.99943 * 4 3 2 33 33 H 1.09000 * 109.47685 * 59.99709 * 4 3 2 34 34 H 1.08996 * 109.46063 * 294.17589 * 6 5 4 35 35 H 1.09002 * 109.45987 * 54.14769 * 6 5 4 36 36 H 1.08999 * 109.50266 * 299.23340 * 7 6 5 37 37 H 1.09004 * 109.49818 * 179.12233 * 7 6 5 38 38 H 1.08996 * 109.52349 * 62.24534 * 8 7 6 39 39 H 1.08992 * 109.47355 * 54.71010 * 9 8 7 40 40 H 1.09002 * 109.46906 * 174.71495 * 9 8 7 41 41 H 0.97005 * 119.99634 * 179.97438 * 13 12 10 42 42 H 1.08996 * 109.50102 * 297.71637 * 18 8 7 43 43 H 1.09000 * 109.50029 * 177.59588 * 18 8 7 44 44 H 1.08997 * 109.46159 * 305.85303 * 19 5 4 45 45 H 1.09001 * 109.46041 * 65.83128 * 19 5 4 46 46 H 1.08993 * 109.47642 * 306.04573 * 20 2 1 47 47 H 1.09001 * 109.46800 * 186.04344 * 20 2 1 48 48 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 49 49 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 50 50 H 1.07997 * 119.99666 * 179.97438 * 24 23 22 51 51 H 1.08000 * 119.99729 * 180.02562 * 25 24 23 52 52 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1583 3.4286 -1.3187 6 6 1.4936 4.2480 -0.2972 7 6 2.1648 5.6216 -0.2271 8 6 2.0688 6.3016 -1.5956 9 6 2.7903 7.6500 -1.5497 10 6 2.0690 8.5737 -0.6022 11 1 1.1846 8.2329 -0.0843 12 6 2.5385 9.8534 -0.3957 13 7 3.6157 10.2683 -1.0260 14 14 1.6448 10.9981 0.7792 15 1 0.4709 10.2959 1.3573 16 1 2.5656 11.4038 1.8713 17 1 1.1876 12.2043 0.0434 18 6 2.7257 5.4055 -2.6493 19 6 2.0382 4.0382 -2.6492 20 6 1.9955 -0.7659 1.1377 21 6 1.6370 -2.2203 0.9730 22 6 2.4940 -3.0716 0.3008 23 6 2.1654 -4.4059 0.1503 24 6 0.9789 -4.8884 0.6701 25 6 0.1224 -4.0373 1.3431 26 6 0.4514 -2.7033 1.4945 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8308 31 1 3.0798 1.3445 0.1082 32 1 2.0658 1.5014 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 0.4423 4.3704 -0.5575 35 1 1.5728 3.7552 0.6718 36 1 3.2130 5.5009 0.0467 37 1 1.6613 6.2349 0.5202 38 1 1.0210 6.4576 -1.8521 39 1 3.8138 7.5029 -1.2049 40 1 2.8025 8.0898 -2.5470 41 1 3.9459 11.1688 -0.8810 42 1 3.7826 5.2815 -2.4137 43 1 2.6228 5.8645 -3.6326 44 1 2.5129 3.3931 -3.3884 45 1 0.9843 4.1618 -2.8983 46 1 1.5612 -0.3871 2.0629 47 1 3.0797 -0.6610 1.1757 48 1 3.4182 -2.6933 -0.1105 49 1 2.8348 -5.0708 -0.3753 50 1 0.7220 -5.9307 0.5521 51 1 -0.8044 -4.4144 1.7496 52 1 -0.2182 -2.0382 2.0197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563068204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = 16.690709 kcal Electronic energy + Delta-G solvation = -25897.001712 eV Core-core repulsion = 22474.357512 eV Total energy + Delta-G solvation = -3422.644200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.82747 -38.90550 -37.32746 -34.55831 -32.57417 -31.79917 -31.20480 -30.39670 -29.16396 -27.59579 -26.99923 -24.55591 -23.23307 -22.84679 -22.73184 -21.32697 -20.88477 -20.31273 -18.89524 -17.06558 -16.45906 -16.17467 -15.95391 -15.67022 -15.21111 -14.85558 -14.55227 -14.44452 -14.30260 -13.80935 -13.66914 -13.49405 -13.19645 -13.05197 -12.99032 -12.75976 -12.29108 -12.11080 -11.97798 -11.82636 -11.74679 -11.49179 -11.25086 -11.23649 -11.00709 -10.94229 -10.76216 -10.61718 -10.52760 -10.23424 -9.90825 -9.50762 -9.19597 -9.09378 -9.03290 -8.84235 -8.53191 -8.31096 -8.04788 -5.95887 -3.97128 1.03380 1.12154 3.32117 3.34103 3.39785 3.43275 3.78003 4.33012 4.47039 4.48577 4.55451 4.71415 4.81516 4.89557 4.94728 5.01540 5.16694 5.20712 5.27883 5.34679 5.39016 5.39846 5.41151 5.45723 5.54501 5.60011 5.70984 5.72296 5.75003 5.76484 5.87500 5.91051 5.94180 6.03918 6.16007 6.17045 6.22239 6.28016 6.33520 6.47959 6.60930 6.67587 6.70373 6.79167 6.83627 7.01381 7.13470 7.22536 7.38118 7.42138 7.73170 7.89974 8.05353 8.48524 9.09704 9.66205 11.15459 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.001953 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.440028 B =14336.660890 C =14813.843336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.058 3.942 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.054 3.946 7 C -0.099 4.099 8 C -0.081 4.081 9 C 0.027 3.973 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.112 4.112 19 C 0.062 3.938 20 C 0.093 3.907 21 C -0.074 4.074 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.114 4.114 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -29.011 2.782 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.069 4.069 4 C -0.067 4.067 5 N -0.262 5.262 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.100 4.100 9 C -0.010 4.010 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.150 4.150 19 C -0.066 4.066 20 C -0.035 4.035 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.458 -29.083 2.448 29.525 hybrid contribution -1.664 1.151 1.156 2.331 sum -6.122 -27.932 3.604 28.821 Atomic orbital electron populations 1.22523 0.87583 1.02314 1.00640 1.61919 1.07981 1.13863 1.42242 1.22143 1.00941 0.86742 0.97114 1.22010 0.97219 0.89666 0.97846 1.61856 1.57128 1.01226 1.05957 1.22259 0.95442 0.95224 0.94468 1.21543 1.00874 0.92491 0.98803 1.21233 0.99159 0.96684 0.92933 1.19125 0.95497 0.89467 0.96874 1.21297 1.11352 0.97344 1.25151 0.92703 1.25023 0.95103 0.98241 0.96192 1.69979 1.22834 1.17984 1.42737 0.86602 0.79770 0.80981 0.81024 1.19842 1.21100 1.21127 1.21693 1.00416 0.93246 0.99613 1.22078 0.98488 0.96633 0.89361 1.21060 1.00739 0.89680 0.91979 1.19758 0.94723 0.95069 0.97946 1.21059 0.99675 0.93176 0.97747 1.21171 0.97080 0.95709 1.00034 1.21148 0.94758 0.99678 0.98545 1.21111 0.99666 0.93699 0.99606 1.21075 0.96422 0.95636 1.00151 0.95695 0.91140 0.91150 0.94466 0.89764 0.90348 0.95305 0.95659 0.91684 0.91859 0.91024 0.93144 0.96484 0.96754 0.93176 0.91568 0.92146 0.91591 0.95524 0.93891 0.89670 0.85866 0.86119 0.86298 0.86244 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.94 60.07 0.54 0.70 16 2 N -0.54 -5.34 4.75 -244.36 -1.16 -6.50 16 3 C 0.06 0.64 4.89 -3.82 -0.02 0.62 16 4 C 0.06 0.74 4.89 -3.83 -0.02 0.72 16 5 N -0.54 -7.81 4.66 -234.66 -1.09 -8.91 16 6 C 0.05 0.83 5.29 -3.83 -0.02 0.81 16 7 C -0.10 -1.88 5.15 -26.65 -0.14 -2.01 16 8 C -0.08 -1.68 2.20 -90.50 -0.20 -1.87 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 10 C -0.51 -14.38 8.45 -34.44 -0.29 -14.67 16 11 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 12 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.11 -1.96 5.38 -26.65 -0.14 -2.11 16 19 C 0.06 0.92 5.46 -3.83 -0.02 0.90 16 20 C 0.09 0.82 5.12 -4.97 -0.03 0.79 16 21 C -0.07 -0.65 4.88 -104.63 -0.51 -1.16 16 22 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.11 -0.93 7.97 -39.59 -0.32 -1.24 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 29 H 0.07 0.63 6.17 -51.93 -0.32 0.31 16 30 H 0.04 0.43 6.41 -51.93 -0.33 0.09 16 31 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 32 H 0.08 0.95 7.99 -51.92 -0.41 0.53 16 33 H 0.03 0.35 6.45 -51.93 -0.34 0.02 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.44 7.06 -51.93 -0.37 1.07 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 47 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 49 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 52 H 0.12 0.84 8.03 -52.49 -0.42 0.41 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -30.17 399.33 -12.98 -43.15 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -9.50 Total: -2.55 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.96 Total: -21.61 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -1.52 Total: -41.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.17 -12.98 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563068204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.843 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds