Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99976 * 2 1 4 4 C 1.53001 * 109.46659 * 293.95396 * 3 2 1 5 5 N 1.46894 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.46854 * 110.99766 * 294.20556 * 5 4 3 7 7 C 1.53042 * 109.51983 * 174.16080 * 6 5 4 8 8 C 1.53116 * 109.27832 * 59.18369 * 7 6 5 9 9 C 1.53004 * 109.57142 * 182.40886 * 8 7 6 10 10 C 1.50706 * 109.46921 * 294.70891 * 9 8 7 11 11 H 1.08002 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00006 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99746 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47082 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47208 * 120.00299 * 14 12 10 17 17 H 1.48507 * 109.47114 * 240.00377 * 14 12 10 18 18 C 1.53122 * 109.16091 * 302.33997 * 8 7 6 19 19 C 1.46848 * 111.00296 * 169.99957 * 5 4 3 20 20 C 1.46904 * 110.99956 * 123.94754 * 2 1 3 21 21 C 1.50701 * 109.46874 * 66.05008 * 20 2 1 22 22 C 1.38235 * 119.99808 * 89.99842 * 21 20 2 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38232 * 120.00069 * 0.09581 * 23 22 21 25 25 C 1.38234 * 119.99866 * 359.86117 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97587 * 21 20 2 27 27 H 1.09000 * 109.46969 * 296.04518 * 1 2 3 28 28 H 1.08994 * 109.47017 * 56.05102 * 1 2 3 29 29 H 1.09004 * 109.46520 * 176.05153 * 1 2 3 30 30 H 1.08995 * 109.46912 * 53.94682 * 3 2 1 31 31 H 1.09000 * 109.47117 * 173.95636 * 3 2 1 32 32 H 1.09008 * 109.46974 * 299.99943 * 4 3 2 33 33 H 1.09000 * 109.47685 * 59.99709 * 4 3 2 34 34 H 1.08996 * 109.46063 * 294.17589 * 6 5 4 35 35 H 1.09002 * 109.45987 * 54.14769 * 6 5 4 36 36 H 1.08999 * 109.50266 * 299.23340 * 7 6 5 37 37 H 1.09004 * 109.49818 * 179.12233 * 7 6 5 38 38 H 1.08996 * 109.52349 * 62.24534 * 8 7 6 39 39 H 1.08992 * 109.47355 * 54.71010 * 9 8 7 40 40 H 1.09002 * 109.46906 * 174.71495 * 9 8 7 41 41 H 0.97005 * 119.99634 * 179.97438 * 13 12 10 42 42 H 1.08996 * 109.50102 * 297.71637 * 18 8 7 43 43 H 1.09000 * 109.50029 * 177.59588 * 18 8 7 44 44 H 1.08997 * 109.46159 * 305.85303 * 19 5 4 45 45 H 1.09001 * 109.46041 * 65.83128 * 19 5 4 46 46 H 1.08993 * 109.47642 * 306.04573 * 20 2 1 47 47 H 1.09001 * 109.46800 * 186.04344 * 20 2 1 48 48 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 49 49 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 50 50 H 1.07997 * 119.99666 * 179.97438 * 24 23 22 51 51 H 1.08000 * 119.99729 * 180.02562 * 25 24 23 52 52 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1583 3.4286 -1.3187 6 6 1.4936 4.2480 -0.2972 7 6 2.1648 5.6216 -0.2271 8 6 2.0688 6.3016 -1.5956 9 6 2.7903 7.6500 -1.5497 10 6 2.0690 8.5737 -0.6022 11 1 1.1846 8.2329 -0.0843 12 6 2.5385 9.8534 -0.3957 13 7 3.6157 10.2683 -1.0260 14 14 1.6448 10.9981 0.7792 15 1 0.4709 10.2959 1.3573 16 1 2.5656 11.4038 1.8713 17 1 1.1876 12.2043 0.0434 18 6 2.7257 5.4055 -2.6493 19 6 2.0382 4.0382 -2.6492 20 6 1.9955 -0.7659 1.1377 21 6 1.6370 -2.2203 0.9730 22 6 2.4940 -3.0716 0.3008 23 6 2.1654 -4.4059 0.1503 24 6 0.9789 -4.8884 0.6701 25 6 0.1224 -4.0373 1.3431 26 6 0.4514 -2.7033 1.4945 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8308 31 1 3.0798 1.3445 0.1082 32 1 2.0658 1.5014 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 0.4423 4.3704 -0.5575 35 1 1.5728 3.7552 0.6718 36 1 3.2130 5.5009 0.0467 37 1 1.6613 6.2349 0.5202 38 1 1.0210 6.4576 -1.8521 39 1 3.8138 7.5029 -1.2049 40 1 2.8025 8.0898 -2.5470 41 1 3.9459 11.1688 -0.8810 42 1 3.7826 5.2815 -2.4137 43 1 2.6228 5.8645 -3.6326 44 1 2.5129 3.3931 -3.3884 45 1 0.9843 4.1618 -2.8983 46 1 1.5612 -0.3871 2.0629 47 1 3.0797 -0.6610 1.1757 48 1 3.4182 -2.6933 -0.1105 49 1 2.8348 -5.0708 -0.3753 50 1 0.7220 -5.9307 0.5521 51 1 -0.8044 -4.4144 1.7496 52 1 -0.2182 -2.0382 2.0197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563068204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = 0.391626 kcal Electronic energy + Delta-G solvation = -25897.708493 eV Core-core repulsion = 22474.357512 eV Total energy + Delta-G solvation = -3423.350981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52374 -40.05846 -38.20614 -36.11428 -34.34872 -32.72753 -31.78017 -31.72558 -30.52160 -28.62906 -28.13793 -25.97207 -24.52961 -24.08703 -23.37117 -22.53665 -21.77526 -21.39685 -20.44599 -18.43105 -17.62798 -17.37918 -16.73089 -16.55530 -16.30604 -16.00847 -15.86970 -15.51263 -15.25431 -14.99371 -14.83184 -14.58676 -14.33974 -14.21753 -13.95951 -13.65802 -13.57297 -13.38580 -13.24336 -12.98873 -12.76704 -12.67807 -12.61039 -12.54805 -12.32350 -12.16814 -12.01972 -11.82413 -11.80719 -11.72180 -11.60681 -11.23519 -10.86480 -10.69125 -10.52342 -9.76609 -9.69052 -9.32762 -9.16008 -8.17278 -6.26764 0.45506 0.55346 1.38899 1.39168 1.52041 2.41436 2.60656 2.99438 3.15722 3.38994 3.83129 3.92806 3.98710 4.02665 4.04844 4.15299 4.19375 4.20860 4.29740 4.37360 4.39251 4.44824 4.56241 4.57072 4.61305 4.65857 4.67972 4.72994 4.77226 4.82413 4.84508 4.92459 4.99899 5.01372 5.07951 5.12403 5.15680 5.17914 5.21031 5.38927 5.41554 5.46095 5.58398 5.60355 5.67178 5.73915 5.81512 5.89762 6.00433 6.04614 6.16665 6.19545 6.25578 6.31693 6.89554 7.41478 8.94773 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.001953 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.440028 B =14336.660890 C =14813.843336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.065 3.935 4 C 0.068 3.932 5 N -0.545 5.545 6 C 0.065 3.935 7 C -0.094 4.094 8 C -0.075 4.075 9 C 0.033 3.967 10 C -0.528 4.528 11 H 0.060 0.940 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.961 3.039 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.107 4.107 19 C 0.069 3.931 20 C 0.095 3.905 21 C -0.087 4.087 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.123 4.123 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.046 0.954 39 H -0.012 1.012 40 H -0.014 1.014 41 H 0.261 0.739 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.137 0.863 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -30.903 3.432 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.062 4.062 4 C -0.060 4.060 5 N -0.270 5.270 6 C -0.062 4.062 7 C -0.132 4.132 8 C -0.094 4.094 9 C -0.004 4.004 10 C -0.566 4.566 11 H 0.078 0.922 12 C -0.201 4.201 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.145 4.145 19 C -0.059 4.059 20 C -0.032 4.032 21 C -0.087 4.087 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.142 4.142 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.144 0.856 49 H 0.155 0.845 50 H 0.157 0.843 51 H 0.155 0.845 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.934 -30.999 3.098 31.714 hybrid contribution -1.171 1.700 0.927 2.263 sum -7.105 -29.299 4.025 30.416 Atomic orbital electron populations 1.22501 0.87126 1.02493 1.00639 1.61910 1.08423 1.13175 1.42943 1.22016 1.00698 0.87247 0.96283 1.21987 0.97378 0.87999 0.98654 1.61816 1.57515 1.02227 1.05477 1.22080 0.94980 0.93317 0.95845 1.21415 1.00292 0.94439 0.97027 1.21089 0.98251 0.94733 0.95309 1.19018 0.94492 0.92220 0.94685 1.21678 1.11552 0.98010 1.25380 0.92217 1.25965 0.95915 1.00156 0.98024 1.70116 1.24476 1.18605 1.44376 0.85458 0.78757 0.78576 0.78616 1.18577 1.20532 1.20562 1.21600 0.99821 0.94570 0.98483 1.21995 0.98542 0.95119 0.90195 1.21051 1.00791 0.89777 0.91589 1.19814 0.95280 0.94968 0.98683 1.21220 0.99960 0.93764 0.98148 1.21434 0.97613 0.95676 1.00044 1.21461 0.94500 1.00747 0.97991 1.21397 1.00424 0.93517 0.99412 1.21229 0.96404 0.96246 1.00310 0.95453 0.91334 0.90869 0.94868 0.90161 0.89867 0.94838 0.95375 0.89982 0.93180 0.92625 0.93548 0.99334 0.99561 0.92973 0.92571 0.91977 0.89356 0.95026 0.93758 0.89543 0.85614 0.84539 0.84338 0.84497 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.94 127.69 1.14 1.48 16 2 N -0.54 -9.88 4.75 -927.03 -4.41 -14.29 16 3 C 0.07 1.31 4.89 86.30 0.42 1.74 16 4 C 0.07 1.48 4.89 86.30 0.42 1.90 16 5 N -0.54 -14.87 4.66 -896.34 -4.17 -19.05 16 6 C 0.07 1.93 5.29 86.33 0.46 2.39 16 7 C -0.09 -3.56 5.15 30.65 0.16 -3.40 16 8 C -0.08 -3.14 2.20 -10.71 -0.02 -3.17 16 9 C 0.03 1.77 4.45 29.85 0.13 1.90 16 10 C -0.53 -30.23 8.45 25.60 0.22 -30.01 16 11 H 0.06 3.29 7.08 -2.91 -0.02 3.26 16 12 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 13 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 14 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 C -0.11 -3.74 5.38 30.65 0.16 -3.57 16 19 C 0.07 1.93 5.46 86.33 0.47 2.40 16 20 C 0.10 1.57 5.12 85.56 0.44 2.00 16 21 C -0.09 -1.43 4.88 -19.87 -0.10 -1.52 16 22 C -0.11 -1.78 9.70 22.27 0.22 -1.57 16 23 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 24 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 26 C -0.12 -1.83 7.97 22.27 0.18 -1.66 16 27 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 1.17 6.30 -2.39 -0.02 1.15 16 29 H 0.07 1.19 6.17 -2.39 -0.01 1.17 16 30 H 0.03 0.70 6.41 -2.39 -0.02 0.68 16 31 H 0.08 1.69 7.93 -2.39 -0.02 1.67 16 32 H 0.08 1.78 7.99 -2.38 -0.02 1.77 16 33 H 0.03 0.73 6.45 -2.39 -0.02 0.71 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 2.16 6.21 -2.39 -0.01 2.15 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.25 7.06 -2.39 -0.02 2.24 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.09 2.11 8.01 -2.39 -0.02 2.09 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 47 H 0.09 1.37 7.87 -2.39 -0.02 1.35 16 48 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 49 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 50 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 51 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 52 H 0.12 1.59 8.03 -2.91 -0.02 1.57 16 Total: -1.00 -65.37 399.33 0.01 -65.36 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.85 Total: 13.88 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 5.43 Total: -35.24 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -8.30 Total: -90.90 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.37 0.01 -65.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563068204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.751 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds