Wall clock time and date at job start Tue Mar 31 2020 12:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47140 * 2 1 4 4 C 1.36056 * 116.99985 * 180.02562 * 3 2 1 5 5 C 1.38495 * 120.04938 * 0.18901 * 4 3 2 6 6 C 1.38354 * 120.02953 * 180.25496 * 5 4 3 7 7 Br 1.89098 * 119.92822 * 179.76895 * 6 5 4 8 8 C 1.38523 * 120.13526 * 359.78534 * 6 5 4 9 9 F 1.35102 * 119.94613 * 179.97438 * 8 6 5 10 10 C 1.38392 * 120.10415 * 0.02562 * 8 6 5 11 11 C 1.38717 * 119.97028 * 359.97438 * 10 8 6 12 12 N 1.40004 * 120.07284 * 179.97438 * 11 10 8 13 13 C 1.46496 * 119.99647 * 0.02562 * 12 11 10 14 14 C 1.50706 * 109.47106 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.09001 * 109.47216 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46727 * 300.00015 * 1 2 3 24 24 H 1.08995 * 109.47258 * 60.00139 * 1 2 3 25 25 H 1.08995 * 109.46666 * 239.99561 * 2 1 3 26 26 H 1.09003 * 109.46933 * 119.99801 * 2 1 3 27 27 H 1.07998 * 119.98396 * 0.02562 * 5 4 3 28 28 H 1.08005 * 120.01652 * 179.97438 * 10 8 6 29 29 H 0.96998 * 120.00162 * 179.97438 * 12 11 10 30 30 H 1.09001 * 109.47001 * 59.99950 * 13 12 11 31 31 H 1.09000 * 109.47574 * 300.00166 * 13 12 11 32 32 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3552 1.5255 -0.0005 5 6 4.1998 0.4279 -0.0050 6 6 5.5713 0.6096 -0.0002 7 35 6.7219 -0.8911 0.0002 8 6 6.1034 1.8886 0.0045 9 9 7.4433 2.0616 0.0097 10 6 5.2646 2.9893 0.0051 11 6 3.8888 2.8122 0.0003 12 7 3.0382 3.9242 0.0014 13 6 3.6010 5.2767 0.0070 14 6 2.4822 6.2864 0.0064 15 1 1.4547 5.9537 0.0027 16 6 2.7703 7.6347 0.0106 17 7 4.0216 8.0397 0.0147 18 14 1.3835 8.8861 0.0106 19 1 1.0126 9.2140 1.4107 20 1 1.8299 10.1198 -0.6851 21 1 0.2054 8.3195 -0.6937 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7876 -0.5703 -0.0085 28 1 5.6810 3.9859 0.0092 29 1 2.0764 3.7991 -0.0023 30 1 4.2174 5.4174 -0.8809 31 1 4.2127 5.4121 0.8990 32 1 4.2242 8.9883 0.0180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564321699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:07 Heat of formation + Delta-G solvation = -78.698456 kcal Electronic energy + Delta-G solvation = -18269.025296 eV Core-core repulsion = 14996.705925 eV Total energy + Delta-G solvation = -3272.319371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.96785 -41.28616 -38.64477 -36.81611 -34.74408 -32.78013 -32.36268 -30.69283 -30.01975 -27.79544 -25.56395 -24.19745 -23.07226 -22.35408 -19.71788 -18.79983 -18.28919 -17.87853 -17.13838 -16.67427 -16.61480 -16.26561 -15.66730 -15.34941 -15.08839 -15.02788 -14.23232 -14.10813 -13.85493 -13.74488 -13.18767 -13.09201 -12.96386 -12.81818 -12.66862 -12.21546 -12.19067 -11.87868 -11.49000 -11.47710 -11.27927 -10.85402 -10.49536 -9.60979 -8.31689 -8.18590 -6.45462 0.09888 0.10891 0.56828 1.42083 1.42879 1.54147 2.17244 2.32560 2.44650 2.62292 3.04270 3.19285 3.58930 4.02433 4.13366 4.15079 4.24593 4.43585 4.54262 4.60529 4.83913 4.86743 4.92541 4.99380 5.00844 5.24508 5.29887 5.45848 5.56134 5.83670 6.17687 6.43011 6.66325 6.98503 7.26984 8.79878 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.003990 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.351353 B = 7016.347850 C = 8679.946038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.327 6.327 4 C 0.049 3.951 5 C -0.098 4.098 6 C -0.169 4.169 7 Br -0.028 7.028 8 C 0.138 3.862 9 F -0.134 7.134 10 C -0.224 4.224 11 C 0.234 3.766 12 N -0.712 5.712 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.071 0.929 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.976 3.024 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.262 1.262 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.131 0.869 29 H 0.406 0.594 30 H 0.000 1.000 31 H 0.000 1.000 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -20.837 -0.040 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.242 6.242 4 C -0.001 4.001 5 C -0.119 4.119 6 C -0.252 4.252 7 Br 0.056 6.944 8 C 0.116 3.884 9 F -0.112 7.112 10 C -0.250 4.250 11 C 0.123 3.877 12 N -0.336 5.336 13 C 0.143 3.857 14 C -0.595 4.595 15 H 0.089 0.911 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.186 1.186 22 H 0.123 0.877 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.190 0.810 28 H 0.149 0.851 29 H 0.241 0.759 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.779 -20.853 -0.041 20.868 hybrid contribution -0.399 1.286 0.010 1.346 sum -1.178 -19.567 -0.032 19.603 Atomic orbital electron populations 1.21803 0.91594 1.04206 1.02995 1.23124 0.96855 0.80489 1.02576 1.86053 1.16984 1.31615 1.89596 1.18221 0.83895 0.91201 1.06802 1.20860 0.90096 0.99161 1.01819 1.21201 0.94861 0.90484 1.18668 1.96615 1.63509 1.36149 1.98105 1.16930 0.77040 0.92402 1.02004 1.91488 1.29742 1.96232 1.93757 1.20294 0.91374 0.98789 1.14571 1.17387 0.89801 0.86171 0.94320 1.45223 1.07991 1.03420 1.76981 1.18745 0.94448 0.77929 0.94575 1.21526 0.93437 0.91609 1.52936 0.91090 1.25870 0.98506 1.00541 0.93884 1.70070 1.19726 1.16611 1.49938 0.85277 0.78598 0.77563 0.78558 1.19694 1.20647 1.18628 0.87745 0.92174 0.92168 0.90691 0.90699 0.80990 0.85140 0.75854 0.98261 0.98263 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -9.20 9.38 -94.19 -0.88 -10.09 16 4 C 0.05 1.51 6.70 22.59 0.15 1.67 16 5 C -0.10 -2.58 8.77 22.36 0.20 -2.38 16 6 C -0.17 -4.96 6.23 22.37 0.14 -4.82 16 7 Br -0.03 -0.69 33.27 -20.37 -0.68 -1.37 16 8 C 0.14 4.76 7.26 22.37 0.16 4.92 16 9 F -0.13 -4.64 16.72 44.97 0.75 -3.89 16 10 C -0.22 -8.65 9.29 22.42 0.21 -8.45 16 11 C 0.23 8.89 6.67 38.20 0.25 9.14 16 12 N -0.71 -30.39 5.73 -342.68 -1.96 -32.35 16 13 C 0.27 13.65 4.67 85.64 0.40 14.05 16 14 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 15 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 16 C 0.01 0.66 5.46 84.65 0.46 1.12 16 17 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 18 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 26 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 27 H 0.17 3.30 6.29 -2.91 -0.02 3.28 16 28 H 0.13 5.52 6.74 -2.91 -0.02 5.50 16 29 H 0.41 16.45 7.68 -92.71 -0.71 15.73 16 30 H 0.00 -0.02 7.95 -2.39 -0.02 -0.04 16 31 H 0.00 -0.02 7.95 -2.39 -0.02 -0.04 16 32 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -59.86 301.59 3.33 -56.53 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.45 Total: 15.04 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.35 Total: -14.79 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.68 Total: -85.54 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.88 Total: -10.09 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.75 Total: -3.89 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.68 Total: -1.37 kcal Total: -59.86 3.33 -56.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564321699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.173 kcal (2) G-P(sol) polarization free energy of solvation -59.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds