Wall clock time and date at job start Tue Mar 31 2020 10:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00139 * 2 1 4 4 C 1.50703 * 109.47382 * 299.12801 * 3 2 1 5 5 C 1.38251 * 119.99926 * 99.99599 * 4 3 2 6 6 C 1.38218 * 119.99777 * 180.25846 * 5 4 3 7 7 C 1.38255 * 120.00097 * 359.53117 * 6 5 4 8 8 C 1.38208 * 119.99684 * 0.43068 * 7 6 5 9 9 C 1.38209 * 119.99767 * 279.98117 * 4 3 2 10 10 C 1.50699 * 120.00559 * 359.97438 * 9 4 3 11 11 N 1.46902 * 109.46664 * 81.90098 * 10 9 4 12 12 C 1.46904 * 110.99919 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47367 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99923 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99674 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46899 * 90.00559 * 17 15 13 19 19 H 1.48501 * 109.47119 * 210.00277 * 17 15 13 20 20 H 1.48495 * 109.47320 * 330.00138 * 17 15 13 21 21 C 1.46894 * 111.00013 * 123.95572 * 2 1 3 22 22 C 1.52999 * 109.47218 * 176.04037 * 21 2 1 23 23 C 1.52992 * 109.47417 * 180.02562 * 22 21 2 24 24 C 1.52994 * 109.47455 * 60.00156 * 23 22 21 25 25 C 1.53005 * 109.46983 * 300.00354 * 24 23 22 26 26 C 1.52996 * 109.47060 * 59.99796 * 25 24 23 27 27 H 1.08999 * 109.46892 * 54.28532 * 1 2 3 28 28 H 1.08996 * 109.47156 * 174.29068 * 1 2 3 29 29 H 1.09003 * 109.46589 * 294.29165 * 1 2 3 30 30 H 1.08999 * 109.47155 * 179.13312 * 3 2 1 31 31 H 1.09001 * 109.47204 * 59.12637 * 3 2 1 32 32 H 1.07997 * 120.00375 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.99914 * 179.72853 * 6 5 4 34 34 H 1.08001 * 119.99922 * 180.20768 * 7 6 5 35 35 H 1.08006 * 119.99624 * 179.78306 * 8 7 6 36 36 H 1.08996 * 109.47411 * 201.89985 * 10 9 4 37 37 H 1.08999 * 109.47141 * 321.90495 * 10 9 4 38 38 H 1.00898 * 111.00669 * 303.95306 * 11 10 9 39 39 H 1.09010 * 109.47086 * 300.00062 * 12 11 10 40 40 H 1.08999 * 109.47061 * 59.99495 * 12 11 10 41 41 H 0.96998 * 119.99706 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47223 * 296.04432 * 21 2 1 43 43 H 1.09005 * 109.47447 * 300.00460 * 22 21 2 44 44 H 1.09002 * 109.46917 * 59.99952 * 22 21 2 45 45 H 1.09008 * 109.46919 * 299.99994 * 23 22 21 46 46 H 1.09001 * 109.47696 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.47718 * 180.02562 * 24 23 22 48 48 H 1.08998 * 109.47355 * 59.99981 * 24 23 22 49 49 H 1.08995 * 109.47147 * 299.99636 * 25 24 23 50 50 H 1.09002 * 109.46938 * 179.97438 * 25 24 23 51 51 H 1.09000 * 109.46728 * 180.02562 * 26 25 24 52 52 H 1.08995 * 109.47271 * 59.99916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5299 2.0883 -1.2411 5 6 0.4564 2.9571 -1.1759 6 6 0.0261 3.6105 -2.3153 7 6 0.6751 3.4027 -3.5183 8 6 1.7487 2.5347 -3.5832 9 6 2.1762 1.8774 -2.4444 10 6 3.3469 0.9311 -2.5154 11 7 2.8550 -0.4488 -2.6249 12 6 3.9710 -1.4014 -2.6958 13 6 3.4288 -2.8031 -2.8066 14 1 2.3619 -2.9697 -2.8222 15 6 4.2949 -3.8729 -2.8879 16 7 5.5942 -3.6700 -2.8684 17 14 3.6227 -5.6104 -3.0244 18 1 3.4477 -5.9623 -4.4565 19 1 4.5744 -6.5602 -2.3941 20 1 2.3119 -5.6899 -2.3313 21 6 1.9954 -0.7660 1.1375 22 6 3.5217 -0.8265 1.0491 23 6 4.0700 -1.6248 2.2334 24 6 3.5005 -3.0444 2.1990 25 6 1.9742 -2.9840 2.2875 26 6 1.4260 -2.1857 1.1030 27 1 -0.3633 0.5999 -0.8344 28 1 -0.3633 -1.0225 -0.1022 29 1 -0.3632 0.4228 0.9367 30 1 3.0850 1.3423 0.0155 31 1 1.6334 1.8996 0.8820 32 1 -0.0487 3.1218 -0.2357 33 1 -0.8153 4.2859 -2.2653 34 1 0.3409 3.9158 -4.4079 35 1 2.2535 2.3697 -4.5237 36 1 3.9551 1.1703 -3.3876 37 1 3.9502 1.0312 -1.6131 38 1 2.2361 -0.6739 -1.8605 39 1 4.5841 -1.1785 -3.5692 40 1 4.5784 -1.3173 -1.7947 41 1 6.2034 -4.4227 -2.9252 42 1 1.7044 -0.2799 2.0687 43 1 3.8127 -1.3126 0.1178 44 1 3.9274 0.1849 1.0732 45 1 3.7790 -1.1391 3.1649 46 1 5.1573 -1.6676 2.1707 47 1 3.8908 -3.6131 3.0431 48 1 3.7915 -3.5302 1.2677 49 1 1.6832 -2.4983 3.2188 50 1 1.5685 -3.9954 2.2625 51 1 0.3387 -2.1423 1.1663 52 1 1.7170 -2.6714 0.1716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565417417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:10 Heat of formation + Delta-G solvation = 13.122220 kcal Electronic energy + Delta-G solvation = -28550.805592 eV Core-core repulsion = 25128.006651 eV Total energy + Delta-G solvation = -3422.798941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.90932 -38.56780 -35.70725 -35.03044 -32.60930 -31.59976 -30.68322 -30.62883 -28.96173 -27.17087 -26.65986 -24.32514 -23.74648 -22.21409 -21.65136 -21.23637 -20.97641 -19.81011 -19.37033 -16.60587 -16.30518 -15.86953 -15.56594 -15.03706 -14.59362 -14.51230 -14.42147 -14.10821 -13.76734 -13.69677 -13.39952 -13.20311 -13.11394 -12.79828 -12.52298 -12.23949 -12.14710 -12.11019 -11.75311 -11.51607 -11.37851 -11.19832 -11.10995 -10.99575 -10.82286 -10.71905 -10.62303 -10.52793 -10.37111 -10.23399 -9.96977 -9.79885 -9.69348 -9.07342 -8.60366 -8.42290 -8.34002 -8.07065 -6.95543 -5.93166 -3.92768 1.54932 1.64275 3.36395 3.42592 3.46166 3.84782 4.25082 4.51634 4.87208 4.94677 4.99809 5.03733 5.17877 5.21925 5.25506 5.37496 5.42826 5.43279 5.46437 5.56375 5.61760 5.66256 5.69227 5.70537 5.79494 5.81127 5.83594 5.90789 5.98631 6.04490 6.10436 6.14582 6.20672 6.24420 6.33451 6.36472 6.45076 6.48529 6.50312 6.54329 6.65775 6.67319 6.72802 6.84240 7.02306 7.22602 7.27264 7.35165 7.46196 7.63335 7.92452 8.28859 8.70158 8.98179 9.20498 9.71357 11.17922 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.005542 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.192871 B = 5051.528469 C = 6734.264822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.523 5.523 3 C 0.089 3.911 4 C -0.079 4.079 5 C -0.116 4.116 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.105 4.105 9 C -0.043 4.043 10 C 0.098 3.902 11 N -0.688 5.688 12 C 0.198 3.802 13 C -0.499 4.499 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.095 3.905 22 C -0.122 4.122 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.118 4.118 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.358 0.642 39 H 0.019 0.981 40 H -0.016 1.016 41 H 0.259 0.741 42 H 0.032 0.968 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.058 0.942 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 11.018 9.370 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.247 5.247 3 C -0.038 4.038 4 C -0.080 4.080 5 C -0.135 4.135 6 C -0.151 4.151 7 C -0.140 4.140 8 C -0.124 4.124 9 C -0.044 4.044 10 C -0.032 4.032 11 N -0.326 5.326 12 C 0.071 3.929 13 C -0.538 4.538 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.013 4.013 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.156 4.156 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.182 0.818 39 H 0.037 0.963 40 H 0.002 0.998 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.459 10.688 8.283 15.950 hybrid contribution -0.232 -0.524 1.459 1.567 sum -8.691 10.164 9.742 16.545 Atomic orbital electron populations 1.22452 0.87559 1.02647 0.99940 1.61864 1.07738 1.11951 1.43117 1.21125 1.00902 0.88100 0.93678 1.19588 0.96248 0.97353 0.94851 1.20924 0.96736 0.97687 0.98156 1.20967 1.00270 1.00798 0.93052 1.21082 0.96458 0.98944 0.97534 1.21075 0.96927 0.96292 0.98109 1.19913 0.96959 0.95375 0.92117 1.20787 0.92373 0.90683 0.99323 1.60829 1.20842 0.98791 1.52096 1.19481 0.88316 0.90019 0.95072 1.21138 0.93153 0.90628 1.48887 0.92259 1.24920 0.94761 0.98889 0.95781 1.69964 1.01518 1.30935 1.51488 0.86625 0.78692 0.84666 0.78185 1.20814 1.21474 1.19875 1.21590 0.95407 0.93990 0.90289 1.21761 0.93639 0.99875 1.00723 1.21431 1.00114 0.95730 0.97605 1.21559 0.95196 0.96879 1.02410 1.21465 0.96020 0.99793 0.97765 1.21687 0.99178 0.94478 1.00220 0.91051 0.90883 0.96346 0.89344 0.94694 0.86934 0.86750 0.86575 0.86026 0.91901 0.95856 0.81836 0.96306 0.99810 0.93183 0.95024 0.88883 0.92774 0.93044 0.91958 0.92695 0.90719 0.92915 0.92097 0.92363 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.77 60.07 0.53 0.82 16 2 N -0.52 -7.69 2.14 -236.33 -0.51 -8.19 16 3 C 0.09 1.24 4.24 -4.98 -0.02 1.22 16 4 C -0.08 -1.15 4.38 -104.63 -0.46 -1.61 16 5 C -0.12 -1.47 8.53 -39.58 -0.34 -1.81 16 6 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 7 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 8 C -0.11 -1.57 9.67 -39.58 -0.38 -1.95 16 9 C -0.04 -0.69 5.39 -104.62 -0.56 -1.26 16 10 C 0.10 1.84 5.28 -4.98 -0.03 1.81 16 11 N -0.69 -15.25 6.48 -116.33 -0.75 -16.01 16 12 C 0.20 5.19 5.39 -4.97 -0.03 5.17 16 13 C -0.50 -14.04 9.32 -34.44 -0.32 -14.36 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.09 1.35 1.95 -67.71 -0.13 1.22 16 22 C -0.12 -1.90 4.98 -26.74 -0.13 -2.03 16 23 C -0.11 -1.54 5.92 -26.74 -0.16 -1.70 16 24 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 25 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 26 C -0.12 -1.71 4.84 -26.73 -0.13 -1.84 16 27 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 28 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 1.32 4.42 -51.93 -0.23 1.09 16 31 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 32 H 0.11 1.21 8.04 -52.49 -0.42 0.79 16 33 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.73 8.05 -52.48 -0.42 1.31 16 36 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 37 H 0.02 0.44 6.46 -51.93 -0.34 0.11 16 38 H 0.36 7.62 5.93 -39.29 -0.23 7.39 16 39 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 40 H -0.02 -0.43 6.88 -51.93 -0.36 -0.79 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.84 6.83 -51.93 -0.35 1.49 16 44 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 45 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 52 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -29.40 390.30 -12.15 -41.55 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -9.11 Total: 8.22 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -3.37 Total: -22.27 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.52 Total: -50.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.40 -12.15 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565417417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.675 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds