Wall clock time and date at job start Tue Mar 31 2020 10:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00139 * 2 1 4 4 C 1.50703 * 109.47382 * 299.12801 * 3 2 1 5 5 C 1.38251 * 119.99926 * 99.99599 * 4 3 2 6 6 C 1.38218 * 119.99777 * 180.25846 * 5 4 3 7 7 C 1.38255 * 120.00097 * 359.53117 * 6 5 4 8 8 C 1.38208 * 119.99684 * 0.43068 * 7 6 5 9 9 C 1.38209 * 119.99767 * 279.98117 * 4 3 2 10 10 C 1.50699 * 120.00559 * 359.97438 * 9 4 3 11 11 N 1.46902 * 109.46664 * 81.90098 * 10 9 4 12 12 C 1.46904 * 110.99919 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47367 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99923 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99674 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46899 * 90.00559 * 17 15 13 19 19 H 1.48501 * 109.47119 * 210.00277 * 17 15 13 20 20 H 1.48495 * 109.47320 * 330.00138 * 17 15 13 21 21 C 1.46894 * 111.00013 * 123.95572 * 2 1 3 22 22 C 1.52999 * 109.47218 * 176.04037 * 21 2 1 23 23 C 1.52992 * 109.47417 * 180.02562 * 22 21 2 24 24 C 1.52994 * 109.47455 * 60.00156 * 23 22 21 25 25 C 1.53005 * 109.46983 * 300.00354 * 24 23 22 26 26 C 1.52996 * 109.47060 * 59.99796 * 25 24 23 27 27 H 1.08999 * 109.46892 * 54.28532 * 1 2 3 28 28 H 1.08996 * 109.47156 * 174.29068 * 1 2 3 29 29 H 1.09003 * 109.46589 * 294.29165 * 1 2 3 30 30 H 1.08999 * 109.47155 * 179.13312 * 3 2 1 31 31 H 1.09001 * 109.47204 * 59.12637 * 3 2 1 32 32 H 1.07997 * 120.00375 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.99914 * 179.72853 * 6 5 4 34 34 H 1.08001 * 119.99922 * 180.20768 * 7 6 5 35 35 H 1.08006 * 119.99624 * 179.78306 * 8 7 6 36 36 H 1.08996 * 109.47411 * 201.89985 * 10 9 4 37 37 H 1.08999 * 109.47141 * 321.90495 * 10 9 4 38 38 H 1.00898 * 111.00669 * 303.95306 * 11 10 9 39 39 H 1.09010 * 109.47086 * 300.00062 * 12 11 10 40 40 H 1.08999 * 109.47061 * 59.99495 * 12 11 10 41 41 H 0.96998 * 119.99706 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47223 * 296.04432 * 21 2 1 43 43 H 1.09005 * 109.47447 * 300.00460 * 22 21 2 44 44 H 1.09002 * 109.46917 * 59.99952 * 22 21 2 45 45 H 1.09008 * 109.46919 * 299.99994 * 23 22 21 46 46 H 1.09001 * 109.47696 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.47718 * 180.02562 * 24 23 22 48 48 H 1.08998 * 109.47355 * 59.99981 * 24 23 22 49 49 H 1.08995 * 109.47147 * 299.99636 * 25 24 23 50 50 H 1.09002 * 109.46938 * 179.97438 * 25 24 23 51 51 H 1.09000 * 109.46728 * 180.02562 * 26 25 24 52 52 H 1.08995 * 109.47271 * 59.99916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5299 2.0883 -1.2411 5 6 0.4564 2.9571 -1.1759 6 6 0.0261 3.6105 -2.3153 7 6 0.6751 3.4027 -3.5183 8 6 1.7487 2.5347 -3.5832 9 6 2.1762 1.8774 -2.4444 10 6 3.3469 0.9311 -2.5154 11 7 2.8550 -0.4488 -2.6249 12 6 3.9710 -1.4014 -2.6958 13 6 3.4288 -2.8031 -2.8066 14 1 2.3619 -2.9697 -2.8222 15 6 4.2949 -3.8729 -2.8879 16 7 5.5942 -3.6700 -2.8684 17 14 3.6227 -5.6104 -3.0244 18 1 3.4477 -5.9623 -4.4565 19 1 4.5744 -6.5602 -2.3941 20 1 2.3119 -5.6899 -2.3313 21 6 1.9954 -0.7660 1.1375 22 6 3.5217 -0.8265 1.0491 23 6 4.0700 -1.6248 2.2334 24 6 3.5005 -3.0444 2.1990 25 6 1.9742 -2.9840 2.2875 26 6 1.4260 -2.1857 1.1030 27 1 -0.3633 0.5999 -0.8344 28 1 -0.3633 -1.0225 -0.1022 29 1 -0.3632 0.4228 0.9367 30 1 3.0850 1.3423 0.0155 31 1 1.6334 1.8996 0.8820 32 1 -0.0487 3.1218 -0.2357 33 1 -0.8153 4.2859 -2.2653 34 1 0.3409 3.9158 -4.4079 35 1 2.2535 2.3697 -4.5237 36 1 3.9551 1.1703 -3.3876 37 1 3.9502 1.0312 -1.6131 38 1 2.2361 -0.6739 -1.8605 39 1 4.5841 -1.1785 -3.5692 40 1 4.5784 -1.3173 -1.7947 41 1 6.2034 -4.4227 -2.9252 42 1 1.7044 -0.2799 2.0687 43 1 3.8127 -1.3126 0.1178 44 1 3.9274 0.1849 1.0732 45 1 3.7790 -1.1391 3.1649 46 1 5.1573 -1.6676 2.1707 47 1 3.8908 -3.6131 3.0431 48 1 3.7915 -3.5302 1.2677 49 1 1.6832 -2.4983 3.2188 50 1 1.5685 -3.9954 2.2625 51 1 0.3387 -2.1423 1.1663 52 1 1.7170 -2.6714 0.1716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565417417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:09 Heat of formation + Delta-G solvation = -2.001397 kcal Electronic energy + Delta-G solvation = -28551.461401 eV Core-core repulsion = 25128.006651 eV Total energy + Delta-G solvation = -3423.454751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04653 -39.69534 -36.91469 -36.71341 -34.61320 -32.77082 -32.11243 -31.78643 -30.10140 -28.82915 -27.97403 -25.89565 -24.99342 -23.42498 -23.21988 -22.77893 -22.14211 -20.96759 -20.55297 -18.55349 -17.52927 -17.22186 -16.74214 -16.60011 -16.10289 -15.80193 -15.66150 -15.33030 -15.15506 -15.06985 -14.80239 -14.59819 -14.37317 -14.11447 -13.88645 -13.55620 -13.41275 -13.31742 -13.15364 -12.93220 -12.89547 -12.66934 -12.58736 -12.50307 -12.28159 -12.20584 -12.04887 -11.93667 -11.72105 -11.60464 -11.40081 -11.20557 -11.11791 -10.83732 -10.60550 -9.66819 -9.53286 -9.20170 -8.79117 -8.16227 -6.24784 0.49014 0.56254 1.38702 1.40377 1.51249 2.41828 2.77756 3.14636 3.17083 3.73191 3.80643 3.86168 3.93867 4.02807 4.09431 4.17914 4.26204 4.30375 4.33846 4.37154 4.45098 4.50762 4.55785 4.56350 4.64352 4.64958 4.66384 4.70645 4.81098 4.83137 4.88873 4.96025 5.03685 5.13970 5.15315 5.19992 5.21813 5.23584 5.32213 5.33251 5.35969 5.39167 5.44254 5.62582 5.64060 5.67348 5.69292 5.86654 6.11886 6.16222 6.21945 6.26659 6.65254 6.87533 7.22561 7.45823 8.95234 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.005542 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.192871 B = 5051.528469 C = 6734.264822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.093 3.907 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.070 4.070 10 C 0.104 3.896 11 N -0.688 5.688 12 C 0.219 3.781 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.102 3.898 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.107 4.107 26 C -0.114 4.114 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.363 0.637 39 H -0.016 1.016 40 H -0.041 1.041 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.076 0.924 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 12.135 11.330 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.034 4.034 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.070 4.070 10 C -0.025 4.025 11 N -0.326 5.326 12 C 0.091 3.909 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.190 4.190 16 N -0.573 5.573 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.005 4.005 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.161 4.161 25 C -0.145 4.145 26 C -0.152 4.152 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.188 0.812 39 H 0.003 0.997 40 H -0.023 1.023 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.095 0.905 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.605 11.822 10.243 19.477 hybrid contribution 0.746 -0.768 0.818 1.347 sum -10.859 11.054 11.061 19.038 Atomic orbital electron populations 1.22411 0.86362 1.02431 1.00924 1.61753 1.08960 1.12600 1.43876 1.21057 0.99816 0.87973 0.94517 1.19676 0.96843 0.97966 0.94087 1.21212 0.95684 0.96493 0.99694 1.21406 1.00405 1.00121 0.92165 1.21380 0.95299 0.98023 0.99184 1.21169 0.98134 0.97315 0.97467 1.19697 0.97074 0.96337 0.93943 1.20687 0.93939 0.89527 0.98353 1.60743 1.19364 0.99896 1.52554 1.19062 0.88777 0.90831 0.92204 1.21346 0.92950 0.91758 1.49232 0.92766 1.25775 0.94924 1.03282 0.95003 1.70095 1.02850 1.32365 1.52017 0.85536 0.78436 0.79182 0.78436 1.20068 1.20653 1.18835 1.21515 0.93879 0.93963 0.91180 1.21653 0.95388 0.99592 0.98855 1.21425 0.99504 0.95565 0.98057 1.21545 0.96626 0.96933 1.00965 1.21454 0.94618 1.00206 0.98215 1.21634 1.00332 0.94537 0.98708 0.91609 0.91457 0.93898 0.91323 0.92316 0.84228 0.83272 0.83978 0.86633 0.93178 0.96499 0.81152 0.99742 1.02346 0.92923 0.92491 0.94378 0.92480 0.89928 0.92952 0.90655 0.95036 0.89989 0.91620 0.90508 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.77 127.69 1.12 1.76 16 2 N -0.55 -15.87 2.14 -901.63 -1.93 -17.81 16 3 C 0.09 2.52 4.24 85.56 0.36 2.88 16 4 C -0.08 -2.36 4.38 -19.87 -0.09 -2.45 16 5 C -0.11 -2.46 8.53 22.27 0.19 -2.27 16 6 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 7 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 8 C -0.12 -3.62 9.67 22.27 0.22 -3.41 16 9 C -0.07 -2.30 5.39 -19.87 -0.11 -2.41 16 10 C 0.10 4.22 5.28 85.56 0.45 4.67 16 11 N -0.69 -32.67 6.48 -521.97 -3.38 -36.06 16 12 C 0.22 12.47 5.39 85.56 0.46 12.93 16 13 C -0.51 -30.59 9.32 25.60 0.24 -30.35 16 14 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 17 Si 0.96 45.85 29.54 68.60 2.03 47.88 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 21 C 0.10 2.84 1.95 44.92 0.09 2.92 16 22 C -0.12 -3.80 4.98 30.59 0.15 -3.65 16 23 C -0.11 -2.99 5.92 30.59 0.18 -2.81 16 24 C -0.12 -3.52 5.92 30.59 0.18 -3.34 16 25 C -0.11 -2.65 5.92 30.59 0.18 -2.46 16 26 C -0.11 -3.28 4.84 30.59 0.15 -3.14 16 27 H 0.07 1.67 6.17 -2.39 -0.01 1.66 16 28 H 0.07 1.70 6.34 -2.39 -0.02 1.68 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 2.11 4.42 -2.39 -0.01 2.10 16 31 H 0.06 1.30 8.00 -2.39 -0.02 1.28 16 32 H 0.14 2.31 8.04 -2.91 -0.02 2.29 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.12 3.43 8.05 -2.91 -0.02 3.40 16 36 H 0.05 2.09 8.02 -2.39 -0.02 2.07 16 37 H 0.02 0.70 6.46 -2.39 -0.02 0.69 16 38 H 0.36 16.46 5.93 -89.70 -0.53 15.92 16 39 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 40 H -0.04 -2.50 6.88 -2.39 -0.02 -2.51 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.66 6.83 -2.38 -0.02 1.64 16 44 H 0.06 1.77 6.30 -2.39 -0.02 1.75 16 45 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.08 1.89 6.38 -2.39 -0.02 1.88 16 52 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.39 390.30 2.03 -66.36 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.35 Total: 32.15 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 4.69 Total: -34.96 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -5.03 Total: -111.42 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.39 2.03 -66.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565417417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.359 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds