Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38215 * 120.00410 * 2 1 4 4 C 1.38312 * 120.00369 * 180.02562 * 3 2 1 5 5 Br 1.89105 * 119.99598 * 180.02562 * 4 3 2 6 6 C 1.38350 * 120.00635 * 0.02562 * 4 3 2 7 7 C 1.50698 * 119.99935 * 179.97438 * 6 4 3 8 8 N 1.46497 * 109.47120 * 278.47033 * 7 6 4 9 9 C 1.46494 * 120.00232 * 275.73252 * 8 7 6 10 10 C 1.36943 * 119.99906 * 95.72943 * 8 7 6 11 11 H 1.07998 * 120.00112 * 25.65124 * 10 8 7 12 12 C 1.38815 * 119.99924 * 205.65111 * 10 8 7 13 13 N 1.31620 * 120.00089 * 12.63977 * 12 10 8 14 14 Si 1.86794 * 119.99925 * 192.64122 * 12 10 8 15 15 H 1.48500 * 109.47093 * 90.00055 * 14 12 10 16 16 H 1.48498 * 109.47445 * 209.99993 * 14 12 10 17 17 H 1.48494 * 109.47288 * 330.00191 * 14 12 10 18 18 C 1.38179 * 120.00111 * 359.97438 * 6 4 3 19 19 C 1.38341 * 120.00058 * 180.02562 * 2 1 3 20 20 Cl 1.73605 * 120.00170 * 359.95355 * 19 2 1 21 21 H 1.09003 * 109.47258 * 90.00014 * 1 2 3 22 22 H 1.09002 * 109.47130 * 210.00285 * 1 2 3 23 23 H 1.09002 * 109.47032 * 330.00265 * 1 2 3 24 24 H 1.08002 * 119.99792 * 359.74474 * 3 2 1 25 25 H 1.09007 * 109.47271 * 38.46916 * 7 6 4 26 26 H 1.09000 * 109.47330 * 158.46822 * 7 6 4 27 27 H 1.08998 * 109.47426 * 90.68928 * 9 8 7 28 28 H 1.09005 * 109.47366 * 210.69443 * 9 8 7 29 29 H 1.09000 * 109.46930 * 330.69137 * 9 8 7 30 30 H 0.96996 * 120.00383 * 179.97438 * 13 12 10 31 31 H 1.08007 * 119.99801 * 180.02562 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5813 1.1969 -0.0005 5 35 4.5267 2.8347 0.0002 6 6 4.2731 -0.0012 -0.0016 7 6 5.7801 -0.0010 -0.0028 8 7 6.2674 0.2031 -1.3692 9 6 6.3915 -0.9370 -2.2806 10 6 6.6067 1.4598 -1.7945 11 1 6.9173 2.2066 -1.0789 12 6 6.5516 1.7738 -3.1456 13 7 5.9446 0.9623 -3.9855 14 14 7.3387 3.3478 -3.7716 15 1 8.7507 3.0803 -4.1457 16 1 6.5951 3.8341 -4.9614 17 1 7.2964 4.3805 -2.7053 18 6 3.5824 -1.1979 -0.0016 19 6 2.1987 -1.1981 -0.0005 20 17 1.3307 -2.7016 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6582 2.1323 -0.0042 25 1 6.1439 0.8034 0.6366 26 1 6.1439 -0.9570 0.3737 27 1 5.4622 -1.0606 -2.8367 28 1 7.2107 -0.7580 -2.9771 29 1 6.5940 -1.8410 -1.7061 30 1 5.9057 1.1818 -4.9295 31 1 4.1226 -2.1332 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590639021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = 39.931220 kcal Electronic energy + Delta-G solvation = -16802.870387 eV Core-core repulsion = 13964.031560 eV Total energy + Delta-G solvation = -2838.838827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.25338 -36.41520 -35.56053 -32.99092 -31.52761 -30.88382 -28.64237 -27.93101 -25.90274 -24.51323 -22.28065 -21.49535 -20.08849 -16.80906 -16.06411 -15.67964 -14.81029 -14.76022 -14.08988 -13.59490 -13.55201 -13.15150 -12.97059 -12.37195 -12.19587 -11.91717 -11.60863 -11.32128 -11.20691 -10.96700 -10.89158 -10.61724 -10.53958 -10.36667 -10.16021 -9.98188 -9.78908 -9.21026 -8.45726 -8.41124 -7.90937 -6.74823 -5.74009 -3.16090 1.37589 1.60350 2.24317 2.45524 3.37843 3.44808 3.45441 3.85233 4.52226 4.98116 5.01235 5.36692 5.42925 5.60405 5.63787 5.70165 5.73994 5.83225 5.97758 6.14960 6.28229 6.43196 6.54310 6.58168 6.73461 6.88532 7.06532 7.31166 7.67689 7.86162 8.38856 9.21640 9.81688 10.31467 11.31694 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.006476 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.572213 B = 4322.591299 C = 5121.218201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.061 4.061 5 Br -0.033 7.033 6 C -0.051 4.051 7 C 0.171 3.829 8 N -0.580 5.580 9 C 0.161 3.839 10 C -0.239 4.239 11 H 0.076 0.924 12 C 0.008 3.992 13 N -0.901 5.901 14 Si 0.895 3.105 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.278 1.278 18 C -0.103 4.103 19 C -0.023 4.023 20 Cl -0.082 7.082 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.026 0.974 28 H 0.050 0.950 29 H -0.002 1.002 30 H 0.252 0.748 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 -1.479 9.743 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.106 4.106 4 C -0.142 4.142 5 Br 0.053 6.947 6 C -0.057 4.057 7 C 0.043 3.957 8 N -0.299 5.299 9 C 0.016 3.984 10 C -0.369 4.369 11 H 0.094 0.906 12 C -0.191 4.191 13 N -0.545 5.545 14 Si 0.725 3.275 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.203 1.203 18 C -0.123 4.123 19 C -0.050 4.050 20 Cl -0.053 7.053 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.462 -0.971 9.510 12.127 hybrid contribution -0.154 0.342 -0.780 0.865 sum -7.615 -0.630 8.730 11.602 Atomic orbital electron populations 1.20762 0.90537 1.02826 1.02568 1.19474 0.96256 0.91022 1.03235 1.20826 0.92263 0.97406 1.00153 1.21688 0.93859 0.92783 1.05905 1.96667 1.75974 1.24788 1.97231 1.21160 1.00413 0.90235 0.93942 1.20219 0.85505 1.00056 0.89877 1.44189 1.71341 1.05465 1.08894 1.20819 1.00514 0.85475 0.91578 1.19302 1.36502 0.89508 0.91547 0.90636 1.25026 0.99246 0.97536 0.97248 1.70043 1.44167 1.37462 1.02856 0.86389 0.78966 0.83650 0.78522 1.21454 1.21736 1.20315 1.20815 0.91300 0.98510 1.01718 1.20802 0.92287 0.85954 1.05975 1.98321 1.77111 1.32866 1.96990 0.91082 0.91178 0.91513 0.85177 0.91236 0.93258 0.95586 0.93118 0.98302 0.93755 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.62 36.00 0.35 -0.99 16 2 C -0.10 -1.52 5.88 -104.59 -0.62 -2.13 16 3 C -0.09 -1.44 9.44 -39.56 -0.37 -1.81 16 4 C -0.06 -1.17 6.22 -39.51 -0.25 -1.41 16 5 Br -0.03 -0.63 29.02 -68.01 -1.97 -2.60 16 6 C -0.05 -0.98 5.46 -104.60 -0.57 -1.55 16 7 C 0.17 3.43 5.37 -5.20 -0.03 3.40 16 8 N -0.58 -13.92 2.90 -182.50 -0.53 -14.45 16 9 C 0.16 3.84 9.02 59.84 0.54 4.38 16 10 C -0.24 -6.17 7.56 -15.06 -0.11 -6.29 16 11 H 0.08 1.93 6.92 -52.49 -0.36 1.56 16 12 C 0.01 0.23 5.07 -17.43 -0.09 0.14 16 13 N -0.90 -25.76 10.89 55.49 0.60 -25.16 16 14 Si 0.89 21.67 29.57 -169.99 -5.03 16.65 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.10 -1.80 9.45 -39.55 -0.37 -2.17 16 19 C -0.02 -0.38 6.31 -39.50 -0.25 -0.63 16 20 Cl -0.08 -1.14 27.30 -51.86 -1.42 -2.56 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 23 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 25 H 0.07 1.37 6.90 -51.93 -0.36 1.01 16 26 H 0.05 0.89 7.85 -51.93 -0.41 0.48 16 27 H 0.03 0.68 7.54 -51.93 -0.39 0.29 16 28 H 0.05 1.30 7.22 -51.93 -0.37 0.92 16 29 H 0.00 -0.03 7.94 -51.93 -0.41 -0.44 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.10 8.05 -52.48 -0.42 1.68 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -28.23 292.32 -9.20 -37.42 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -3.49 Total: -4.65 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.77 Total: -9.06 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.08 Total: -39.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.42 Total: -2.56 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -1.97 Total: -2.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.23 -9.20 -37.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590639021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.356 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds