Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38215 * 120.00410 * 2 1 4 4 C 1.38312 * 120.00369 * 180.02562 * 3 2 1 5 5 Br 1.89105 * 119.99598 * 180.02562 * 4 3 2 6 6 C 1.38350 * 120.00635 * 0.02562 * 4 3 2 7 7 C 1.50698 * 119.99935 * 179.97438 * 6 4 3 8 8 N 1.46497 * 109.47120 * 278.47033 * 7 6 4 9 9 C 1.46494 * 120.00232 * 275.73252 * 8 7 6 10 10 C 1.36943 * 119.99906 * 95.72943 * 8 7 6 11 11 H 1.07998 * 120.00112 * 25.65124 * 10 8 7 12 12 C 1.38815 * 119.99924 * 205.65111 * 10 8 7 13 13 N 1.31620 * 120.00089 * 12.63977 * 12 10 8 14 14 Si 1.86794 * 119.99925 * 192.64122 * 12 10 8 15 15 H 1.48500 * 109.47093 * 90.00055 * 14 12 10 16 16 H 1.48498 * 109.47445 * 209.99993 * 14 12 10 17 17 H 1.48494 * 109.47288 * 330.00191 * 14 12 10 18 18 C 1.38179 * 120.00111 * 359.97438 * 6 4 3 19 19 C 1.38341 * 120.00058 * 180.02562 * 2 1 3 20 20 Cl 1.73605 * 120.00170 * 359.95355 * 19 2 1 21 21 H 1.09003 * 109.47258 * 90.00014 * 1 2 3 22 22 H 1.09002 * 109.47130 * 210.00285 * 1 2 3 23 23 H 1.09002 * 109.47032 * 330.00265 * 1 2 3 24 24 H 1.08002 * 119.99792 * 359.74474 * 3 2 1 25 25 H 1.09007 * 109.47271 * 38.46916 * 7 6 4 26 26 H 1.09000 * 109.47330 * 158.46822 * 7 6 4 27 27 H 1.08998 * 109.47426 * 90.68928 * 9 8 7 28 28 H 1.09005 * 109.47366 * 210.69443 * 9 8 7 29 29 H 1.09000 * 109.46930 * 330.69137 * 9 8 7 30 30 H 0.96996 * 120.00383 * 179.97438 * 13 12 10 31 31 H 1.08007 * 119.99801 * 180.02562 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5813 1.1969 -0.0005 5 35 4.5267 2.8347 0.0002 6 6 4.2731 -0.0012 -0.0016 7 6 5.7801 -0.0010 -0.0028 8 7 6.2674 0.2031 -1.3692 9 6 6.3915 -0.9370 -2.2806 10 6 6.6067 1.4598 -1.7945 11 1 6.9173 2.2066 -1.0789 12 6 6.5516 1.7738 -3.1456 13 7 5.9446 0.9623 -3.9855 14 14 7.3387 3.3478 -3.7716 15 1 8.7507 3.0803 -4.1457 16 1 6.5951 3.8341 -4.9614 17 1 7.2964 4.3805 -2.7053 18 6 3.5824 -1.1979 -0.0016 19 6 2.1987 -1.1981 -0.0005 20 17 1.3307 -2.7016 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6582 2.1323 -0.0042 25 1 6.1439 0.8034 0.6366 26 1 6.1439 -0.9570 0.3737 27 1 5.4622 -1.0606 -2.8367 28 1 7.2107 -0.7580 -2.9771 29 1 6.5940 -1.8410 -1.7061 30 1 5.9057 1.1818 -4.9295 31 1 4.1226 -2.1332 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590639021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = 26.316070 kcal Electronic energy + Delta-G solvation = -16803.460784 eV Core-core repulsion = 13964.031560 eV Total energy + Delta-G solvation = -2839.429224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60265 -37.78884 -37.14478 -34.48049 -33.00016 -32.58532 -30.02900 -29.37225 -27.82991 -26.02476 -23.62821 -23.18969 -21.54501 -18.72187 -17.48288 -17.05273 -16.62094 -16.09714 -15.66111 -15.19419 -14.92695 -14.77260 -14.53463 -13.59891 -13.41498 -13.32538 -13.09475 -12.94213 -12.77757 -12.58917 -12.50816 -12.31046 -12.07973 -12.06320 -11.85257 -11.68388 -11.23405 -10.86149 -10.35904 -9.74819 -9.29900 -8.67735 -7.74710 -5.19322 0.01707 0.27054 0.85988 1.15307 1.45557 1.47854 1.53763 2.45612 2.60769 3.43529 3.73245 3.79555 3.86525 4.13078 4.25530 4.44959 4.53331 4.72504 4.79033 4.84353 4.89999 4.95375 5.10981 5.18577 5.31169 5.35306 5.44085 5.70546 5.74306 5.81743 6.42395 7.23756 7.91048 8.36439 9.30233 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.006476 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.572213 B = 4322.591299 C = 5121.218201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.093 4.093 4 C -0.079 4.079 5 Br -0.043 7.043 6 C -0.072 4.072 7 C 0.172 3.828 8 N -0.597 5.597 9 C 0.177 3.823 10 C -0.224 4.224 11 H 0.077 0.923 12 C -0.042 4.042 13 N -0.936 5.936 14 Si 0.939 3.061 15 H -0.288 1.288 16 H -0.301 1.301 17 H -0.269 1.269 18 C -0.105 4.105 19 C -0.032 4.032 20 Cl -0.059 7.059 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.150 0.850 25 H 0.070 0.930 26 H 0.071 0.929 27 H -0.003 1.003 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.242 0.758 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -1.909 11.130 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.113 4.113 4 C -0.159 4.159 5 Br 0.043 6.957 6 C -0.077 4.077 7 C 0.046 3.954 8 N -0.318 5.318 9 C 0.032 3.968 10 C -0.354 4.354 11 H 0.095 0.905 12 C -0.237 4.237 13 N -0.584 5.584 14 Si 0.769 3.231 15 H -0.215 1.215 16 H -0.228 1.228 17 H -0.194 1.194 18 C -0.126 4.126 19 C -0.059 4.059 20 Cl -0.030 7.030 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.107 0.893 24 H 0.168 0.832 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.015 0.985 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.909 -1.401 10.955 14.190 hybrid contribution 0.153 0.356 -1.019 1.090 sum -8.756 -1.045 9.936 13.285 Atomic orbital electron populations 1.20869 0.87792 1.04503 1.03494 1.19932 0.98220 0.90299 1.00590 1.21112 0.91533 0.98866 0.99762 1.21920 0.94948 0.92340 1.06721 1.96638 1.76466 1.25334 1.97278 1.21016 0.99775 0.91158 0.95775 1.20233 0.86384 1.01185 0.87579 1.44242 1.72948 1.04759 1.09816 1.20528 0.97966 0.86841 0.91445 1.19444 1.34807 0.89865 0.91315 0.90519 1.25519 1.00674 0.99710 0.97757 1.70188 1.46753 1.39036 1.02378 0.85670 0.78015 0.81640 0.77813 1.21521 1.22794 1.19371 1.20973 0.92155 0.98344 1.01079 1.20948 0.92218 0.87338 1.05417 1.98330 1.76428 1.31367 1.96829 0.90329 0.90143 0.89331 0.83233 0.91212 0.91060 0.98515 0.95816 0.95058 0.94814 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.62 71.24 0.68 -1.57 16 2 C -0.09 -2.50 5.88 -19.85 -0.12 -2.62 16 3 C -0.09 -2.90 9.44 22.28 0.21 -2.68 16 4 C -0.08 -2.89 6.22 22.31 0.14 -2.75 16 5 Br -0.04 -1.63 29.02 -20.37 -0.59 -2.22 16 6 C -0.07 -2.67 5.46 -19.85 -0.11 -2.78 16 7 C 0.17 6.71 5.37 85.63 0.46 7.17 16 8 N -0.60 -28.44 2.90 -731.32 -2.12 -30.56 16 9 C 0.18 8.48 9.02 127.77 1.15 9.64 16 10 C -0.22 -11.56 7.56 84.03 0.64 -10.92 16 11 H 0.08 3.88 6.92 -2.91 -0.02 3.86 16 12 C -0.04 -2.29 5.07 84.86 0.43 -1.86 16 13 N -0.94 -54.80 10.89 21.65 0.24 -54.57 16 14 Si 0.94 44.97 29.57 68.60 2.03 47.00 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 16 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 C -0.11 -3.48 9.45 22.29 0.21 -3.27 16 19 C -0.03 -0.96 6.31 22.33 0.14 -0.82 16 20 Cl -0.06 -1.47 27.30 -2.72 -0.07 -1.55 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.08 1.51 6.90 -2.39 -0.02 1.49 16 23 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 24 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 25 H 0.07 2.68 6.90 -2.38 -0.02 2.66 16 26 H 0.07 2.42 7.85 -2.39 -0.02 2.40 16 27 H 0.00 -0.19 7.54 -2.39 -0.02 -0.21 16 28 H 0.02 1.22 7.22 -2.38 -0.02 1.20 16 29 H 0.03 1.25 7.94 -2.39 -0.02 1.24 16 30 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.14 4.26 8.05 -2.91 -0.02 4.24 16 Total: -1.00 -60.25 292.32 4.46 -55.79 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: 1.14 Total: -1.44 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 3.84 Total: -12.46 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.88 Total: -85.13 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.55 kcal Atomic # 35 Polarization: -1.63 SS G_CDS: -0.59 Total: -2.22 kcal Total: -60.25 4.46 -55.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590639021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.110 kcal (2) G-P(sol) polarization free energy of solvation -60.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds