Wall clock time and date at job start Tue Mar 31 2020 11:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.99666 * 104.99915 * 14 13 12 16 16 C 1.38229 * 120.02557 * 179.97438 * 15 14 13 17 17 C 1.38243 * 120.03876 * 0.02562 * 16 15 14 18 18 C 1.38278 * 120.00534 * 0.02562 * 17 16 15 19 19 Br 1.89097 * 120.01890 * 179.97438 * 18 17 16 20 20 C 1.38309 * 120.00210 * 284.72317 * 14 13 12 21 21 Cl 1.73597 * 120.01750 * 0.02562 * 20 14 13 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 27 27 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 28 28 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 29 29 H 1.07993 * 119.98846 * 359.95568 * 15 14 13 30 30 H 1.07998 * 119.97771 * 180.02562 * 16 15 14 31 31 H 1.08006 * 119.99983 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.7118 -0.8838 -4.5615 16 6 2.1754 -1.5659 -5.6707 17 6 3.5160 -1.8871 -5.7753 18 6 4.3939 -1.5266 -4.7697 19 35 6.2275 -1.9664 -4.9120 20 6 3.9309 -0.8373 -3.6616 21 17 5.0333 -0.3771 -2.4020 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1609 3.4844 26 1 1.4496 -1.4980 -1.4101 27 1 1.0871 0.6162 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 0.6643 -0.6339 -4.4803 30 1 1.4900 -1.8481 -6.4562 31 1 3.8776 -2.4198 -6.6425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591259217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:52 Heat of formation + Delta-G solvation = 16.848180 kcal Electronic energy + Delta-G solvation = -16219.338823 eV Core-core repulsion = 13379.499040 eV Total energy + Delta-G solvation = -2839.839783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.51952 -36.15525 -36.05094 -33.21589 -32.13028 -31.04913 -29.29091 -28.10451 -25.20111 -24.51257 -22.51434 -21.17439 -20.19704 -17.13372 -16.30578 -15.96732 -15.20540 -14.75892 -14.28323 -13.93351 -13.82394 -13.33426 -12.96907 -12.68059 -11.90336 -11.72493 -11.52070 -11.38893 -11.29337 -10.94728 -10.86589 -10.77222 -10.66691 -10.44270 -10.13831 -10.00852 -9.86559 -9.02986 -8.77808 -8.61302 -8.33759 -7.25313 -5.96395 -3.99004 0.93322 1.10411 1.48077 2.41365 3.36753 3.40281 3.42473 3.45411 4.46383 4.59295 4.76714 5.07366 5.11048 5.25188 5.35509 5.54024 5.60221 5.81014 5.94463 6.16542 6.18298 6.40040 6.59104 6.67842 6.82410 7.07610 7.33698 7.73388 7.89554 8.26679 8.51410 8.60516 9.07918 9.66055 11.10686 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.004137 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.574325 B = 6766.309041 C = 7727.799256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.214 3.786 3 H 0.034 0.966 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.671 5.671 13 C 0.094 3.906 14 C -0.059 4.059 15 C -0.092 4.092 16 C -0.116 4.116 17 C -0.090 4.090 18 C -0.092 4.092 19 Br -0.040 7.040 20 C 0.008 3.992 21 Cl -0.024 7.024 22 H 0.004 0.996 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.325 0.675 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -4.054 -19.312 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.107 3.893 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.300 5.300 13 C -0.035 4.035 14 C -0.061 4.061 15 C -0.111 4.111 16 C -0.135 4.135 17 C -0.110 4.110 18 C -0.173 4.173 19 Br 0.046 6.954 20 C -0.021 4.021 21 Cl 0.006 6.994 22 H 0.023 0.977 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.142 0.858 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.088 -3.960 -18.907 20.577 hybrid contribution -1.060 -0.226 0.755 1.321 sum 6.029 -4.186 -18.152 19.580 Atomic orbital electron populations 1.22446 1.00746 0.99202 1.00486 1.19173 0.89471 0.94462 0.86225 0.94776 1.21094 1.30070 1.12397 0.89450 0.91952 1.24928 0.95371 0.95208 0.98974 1.69867 1.37375 1.23236 1.23398 0.86584 0.79228 0.79601 0.82100 1.20304 1.21510 1.20404 1.60865 1.58175 1.08537 1.02443 1.20936 0.98885 0.95444 0.88276 1.20054 0.90858 0.98208 0.96957 1.21241 0.99896 0.97088 0.92903 1.21154 0.94979 0.98923 0.98456 1.20998 0.92930 0.99582 0.97534 1.21789 0.92104 1.05513 0.97876 1.96707 1.07913 1.92623 1.98204 1.20720 0.92013 0.99102 0.90303 1.98426 1.60943 1.90091 1.49964 0.97699 0.89204 0.95326 0.93065 0.85816 0.94873 0.90034 0.84791 0.84879 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.94 37.16 0.33 -3.63 16 2 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.49 -13.47 8.84 -34.44 -0.30 -13.78 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.67 -13.76 6.13 -109.21 -0.67 -14.43 16 13 C 0.09 1.62 4.95 -4.97 -0.02 1.60 16 14 C -0.06 -0.87 5.40 -104.59 -0.56 -1.44 16 15 C -0.09 -1.10 9.67 -39.58 -0.38 -1.48 16 16 C -0.12 -1.18 10.04 -39.58 -0.40 -1.58 16 17 C -0.09 -0.99 9.79 -39.57 -0.39 -1.37 16 18 C -0.09 -1.23 6.23 -39.48 -0.25 -1.48 16 19 Br -0.04 -0.50 32.53 -68.01 -2.21 -2.71 16 20 C 0.01 0.13 6.32 -39.47 -0.25 -0.12 16 21 Cl -0.02 -0.40 26.35 -51.86 -1.37 -1.77 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.33 6.43 8.46 -39.29 -0.33 6.09 16 27 H 0.03 0.55 7.25 -51.93 -0.38 0.17 16 28 H 0.08 1.50 7.49 -51.93 -0.39 1.11 16 29 H 0.13 1.36 8.00 -52.49 -0.42 0.94 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -28.36 298.12 -10.08 -38.45 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.44 Total: 1.07 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.50 Total: -16.78 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.04 Total: -39.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.37 Total: -1.77 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.21 Total: -2.71 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.36 -10.08 -38.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591259217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.295 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds