Wall clock time and date at job start Tue Mar 31 2020 11:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.99666 * 104.99915 * 14 13 12 16 16 C 1.38229 * 120.02557 * 179.97438 * 15 14 13 17 17 C 1.38243 * 120.03876 * 0.02562 * 16 15 14 18 18 C 1.38278 * 120.00534 * 0.02562 * 17 16 15 19 19 Br 1.89097 * 120.01890 * 179.97438 * 18 17 16 20 20 C 1.38309 * 120.00210 * 284.72317 * 14 13 12 21 21 Cl 1.73597 * 120.01750 * 0.02562 * 20 14 13 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 27 27 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 28 28 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 29 29 H 1.07993 * 119.98846 * 359.95568 * 15 14 13 30 30 H 1.07998 * 119.97771 * 180.02562 * 16 15 14 31 31 H 1.08006 * 119.99983 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.7118 -0.8838 -4.5615 16 6 2.1754 -1.5659 -5.6707 17 6 3.5160 -1.8871 -5.7753 18 6 4.3939 -1.5266 -4.7697 19 35 6.2275 -1.9664 -4.9120 20 6 3.9309 -0.8373 -3.6616 21 17 5.0333 -0.3771 -2.4020 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1609 3.4844 26 1 1.4496 -1.4980 -1.4101 27 1 1.0871 0.6162 -2.5525 28 1 2.7589 1.0461 -2.1182 29 1 0.6643 -0.6339 -4.4803 30 1 1.4900 -1.8481 -6.4562 31 1 3.8776 -2.4198 -6.6425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591259217.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:51 Heat of formation + Delta-G solvation = 0.788028 kcal Electronic energy + Delta-G solvation = -16220.035243 eV Core-core repulsion = 13379.499040 eV Total energy + Delta-G solvation = -2840.536203 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53909 -37.74140 -37.31537 -34.87391 -33.38357 -32.38101 -30.32145 -29.66063 -27.21589 -25.94996 -23.46569 -22.37088 -22.05209 -18.53927 -17.85869 -17.08517 -16.80240 -16.22917 -15.75370 -15.27908 -14.86740 -14.71672 -14.54824 -14.02615 -13.54397 -13.38918 -12.91362 -12.78438 -12.66246 -12.50928 -12.45606 -12.22487 -12.10519 -12.01198 -11.79244 -11.60311 -11.06675 -11.02505 -10.45551 -9.79404 -9.64676 -8.91479 -8.07089 -6.16856 -0.02820 0.11974 0.49665 1.30017 1.43400 1.44742 1.52371 2.43260 2.50172 3.21496 3.52761 3.73737 4.00871 4.17229 4.24250 4.33384 4.47612 4.68772 4.75050 4.88707 4.92514 5.02055 5.13199 5.23736 5.34969 5.46988 5.69993 5.73257 5.85170 6.30541 6.66585 6.84084 6.97563 7.52527 8.97978 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.004137 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.574325 B = 6766.309041 C = 7727.799256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.221 3.779 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.674 5.674 13 C 0.101 3.899 14 C -0.078 4.078 15 C -0.088 4.088 16 C -0.100 4.100 17 C -0.082 4.082 18 C -0.105 4.105 19 Br -0.038 7.038 20 C -0.012 4.012 21 Cl -0.055 7.055 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -5.371 -21.329 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.113 3.887 3 H 0.019 0.981 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.303 5.303 13 C -0.028 4.028 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.119 4.119 17 C -0.102 4.102 18 C -0.186 4.186 19 Br 0.048 6.952 20 C -0.042 4.042 21 Cl -0.026 7.026 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.193 0.807 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.326 -5.284 -20.943 22.507 hybrid contribution -0.830 0.168 1.238 1.500 sum 5.497 -5.116 -19.705 21.088 Atomic orbital electron populations 1.22234 0.99754 0.99312 1.00215 1.18886 0.90062 0.92568 0.87225 0.98105 1.21385 1.30065 1.12267 0.91050 0.93071 1.25635 0.95582 0.95886 1.01623 1.69990 1.38120 1.24226 1.23891 0.85669 0.78483 0.78831 0.78944 1.20367 1.20954 1.19655 1.60653 1.57986 1.09065 1.02637 1.20799 0.99057 0.94721 0.88211 1.19883 0.91269 0.99806 0.97088 1.21520 1.00412 0.96373 0.92405 1.21611 0.95169 0.96721 0.98351 1.21444 0.92984 0.98384 0.97348 1.21978 0.92840 1.05736 0.98026 1.96703 1.07908 1.92504 1.98121 1.20852 0.91890 1.00866 0.90565 1.98408 1.62017 1.90579 1.51556 0.95222 0.92103 0.94862 0.93097 0.85169 0.93796 0.92053 0.82720 0.80709 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.26 8.94 71.98 0.64 -6.62 16 2 C 0.22 11.03 2.57 44.17 0.11 11.14 16 3 H 0.00 0.06 7.80 -2.39 -0.02 0.04 16 4 C -0.51 -28.40 8.84 25.60 0.23 -28.18 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.67 -27.82 6.13 -499.43 -3.06 -30.88 16 13 C 0.10 3.49 4.95 85.56 0.42 3.91 16 14 C -0.08 -2.24 5.40 -19.84 -0.11 -2.34 16 15 C -0.09 -1.81 9.67 22.27 0.22 -1.60 16 16 C -0.10 -1.56 10.04 22.27 0.22 -1.34 16 17 C -0.08 -1.48 9.79 22.28 0.22 -1.26 16 18 C -0.11 -2.63 6.23 22.33 0.14 -2.49 16 19 Br -0.04 -0.90 32.53 -20.37 -0.66 -1.56 16 20 C -0.01 -0.37 6.32 22.34 0.14 -0.23 16 21 Cl -0.05 -1.91 26.35 -2.72 -0.07 -1.98 16 22 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 23 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 24 H 0.03 1.47 8.13 -2.38 -0.02 1.45 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.33 12.90 8.46 -89.70 -0.76 12.14 16 27 H 0.04 1.40 7.25 -2.39 -0.02 1.38 16 28 H 0.06 2.33 7.49 -2.39 -0.02 2.32 16 29 H 0.16 2.52 8.00 -2.91 -0.02 2.50 16 30 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -62.34 298.12 1.55 -60.79 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.39 Total: 7.89 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 2.69 Total: -27.96 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.82 Total: -83.90 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.98 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -0.66 Total: -1.56 kcal Total: -62.34 1.55 -60.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591259217.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.576 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds