Wall clock time and date at job start Tue Mar 31 2020 11:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35696 * 116.99838 * 2 1 4 4 N 1.32270 * 119.67690 * 0.24599 * 3 2 1 5 5 C 1.31931 * 121.65618 * 180.28902 * 4 3 2 6 6 C 1.38172 * 120.82319 * 359.74967 * 5 4 3 7 7 Br 1.89102 * 120.36838 * 180.02562 * 6 5 4 8 8 C 1.38861 * 119.26561 * 359.97438 * 6 5 4 9 9 C 1.38413 * 118.47599 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.43548 * 180.02562 * 9 8 6 11 11 S 1.81398 * 109.47136 * 90.00271 * 10 9 8 12 12 C 1.81399 * 103.00088 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47141 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47162 * 120.00342 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00320 * 17 15 13 21 21 H 1.09005 * 109.46944 * 59.99747 * 1 2 3 22 22 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47232 * 300.00485 * 1 2 3 24 24 H 1.08005 * 119.59272 * 179.72947 * 5 4 3 25 25 H 1.08004 * 120.76097 * 180.02562 * 8 6 5 26 26 H 1.09002 * 109.47378 * 330.00401 * 10 9 8 27 27 H 1.09000 * 109.47022 * 210.00002 * 10 9 8 28 28 H 1.09000 * 109.47070 * 300.00061 * 12 11 10 29 29 H 1.09001 * 109.46593 * 60.00058 * 12 11 10 30 30 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3184 2.3143 0.0049 5 6 1.8763 3.5098 -0.0005 6 6 3.2509 3.6495 -0.0065 7 35 4.0370 5.3694 -0.0136 8 6 4.0488 2.5130 -0.0062 9 6 3.4322 1.2738 0.0007 10 6 4.2555 0.0115 0.0019 11 16 4.5926 -0.4889 1.7126 12 6 5.5757 -1.9998 1.5096 13 6 5.9417 -2.5468 2.8653 14 1 5.6158 -2.0364 3.7596 15 6 6.6925 -3.6990 2.9641 16 7 7.0898 -4.3203 1.8751 17 14 7.1467 -4.3767 4.6444 18 1 6.5827 -3.4990 5.7012 19 1 6.5930 -5.7467 4.7918 20 1 8.6251 -4.4236 4.7762 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.2508 4.3903 -0.0007 25 1 5.1258 2.5942 -0.0104 26 1 5.1974 0.1915 -0.5163 27 1 3.7064 -0.7808 -0.5069 28 1 4.9933 -2.7416 0.9632 29 1 6.4846 -1.7698 0.9536 30 1 7.6177 -5.1310 1.9445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903738.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:01 Heat of formation + Delta-G solvation = -9.987066 kcal Electronic energy + Delta-G solvation = -15733.495451 eV Core-core repulsion = 12894.535712 eV Total energy + Delta-G solvation = -2838.959740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85445 -38.00961 -33.87306 -33.14614 -32.67571 -29.56164 -28.57116 -27.65118 -27.06623 -23.32748 -23.02131 -22.00659 -18.49869 -17.44885 -16.57420 -16.18062 -15.62209 -15.20627 -14.56138 -14.46136 -14.39841 -13.78853 -13.33722 -13.13754 -12.73840 -12.49619 -12.19411 -11.99446 -11.76998 -11.63600 -10.90052 -10.83860 -10.75261 -10.61539 -10.32729 -9.87538 -9.64741 -9.44230 -8.88681 -8.62101 -8.34723 -6.68990 -6.19734 -4.23741 0.76655 0.95940 1.40595 2.64692 3.00996 3.24984 3.32227 3.38529 3.58847 3.82606 4.07387 4.35639 4.62050 4.64012 4.81622 5.17515 5.17686 5.23982 5.26789 5.35740 5.56130 5.70324 5.80996 6.00391 6.15983 7.07871 7.09145 7.11421 7.56206 7.75111 8.00860 8.78322 9.39336 10.91600 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003446 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.316888 B = 8123.789441 C = 9281.095355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.288 6.288 3 C 0.348 3.652 4 N -0.532 5.532 5 C 0.168 3.832 6 C -0.184 4.184 7 Br -0.039 7.039 8 C -0.003 4.003 9 C -0.116 4.116 10 C -0.044 4.044 11 S -0.293 6.293 12 C 0.090 3.910 13 C -0.511 4.511 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.166 0.834 25 H 0.153 0.847 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 17.947 -7.567 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.193 6.193 3 C 0.167 3.833 4 N -0.256 5.256 5 C 0.009 3.991 6 C -0.266 4.266 7 Br 0.045 6.955 8 C -0.031 4.031 9 C -0.121 4.121 10 C -0.192 4.192 11 S -0.064 6.064 12 C -0.057 4.057 13 C -0.550 4.550 14 H 0.085 0.915 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.076 0.924 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.183 0.817 25 H 0.171 0.829 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.983 18.503 -6.691 22.534 hybrid contribution 1.149 -1.255 -0.301 1.728 sum -9.834 17.248 -6.992 21.050 Atomic orbital electron populations 1.22926 0.77117 1.03354 1.02279 1.86381 1.22868 1.23557 1.86522 1.19722 0.88842 0.84869 0.89849 1.67485 1.39770 0.98259 1.20084 1.22362 0.90626 0.94309 0.91829 1.22604 0.96232 0.92554 1.15185 1.96701 1.82665 1.18126 1.97967 1.21320 1.01010 0.89159 0.91610 1.19442 0.90933 0.95503 1.06196 1.21972 1.01026 0.95979 1.00222 1.86835 1.72863 1.39134 1.07561 1.21080 0.95017 0.88331 1.01276 1.20709 1.33896 1.09298 0.91098 0.91450 1.24958 0.95317 0.96139 0.97430 1.69963 1.36749 1.18684 1.27728 0.86303 0.78214 0.78840 0.83354 1.19419 1.20727 1.20718 0.92391 0.88291 0.92083 0.81658 0.82928 0.89547 0.88982 0.94495 0.94560 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.29 -4.36 9.53 -18.79 -0.18 -4.54 16 3 C 0.35 5.26 7.47 -17.13 -0.13 5.13 16 4 N -0.53 -7.22 9.21 -13.31 -0.12 -7.34 16 5 C 0.17 1.94 10.94 -17.53 -0.19 1.75 16 6 C -0.18 -2.18 6.25 -39.38 -0.25 -2.43 16 7 Br -0.04 -0.39 33.73 -68.01 -2.29 -2.68 16 8 C 0.00 -0.04 9.62 -39.29 -0.38 -0.41 16 9 C -0.12 -1.77 5.17 -104.32 -0.54 -2.31 16 10 C -0.04 -0.75 5.87 36.01 0.21 -0.54 16 11 S -0.29 -6.41 21.64 -107.50 -2.33 -8.73 16 12 C 0.09 2.33 5.70 36.01 0.21 2.53 16 13 C -0.51 -14.43 9.13 -34.44 -0.31 -14.75 16 14 H 0.07 1.92 7.71 -52.48 -0.40 1.51 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 24 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 25 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 26 H 0.09 1.36 8.10 -51.92 -0.42 0.94 16 27 H 0.09 1.59 7.54 -51.92 -0.39 1.19 16 28 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 29 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -30.25 302.64 -8.38 -38.63 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -3.31 Total: -3.27 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.43 Total: -7.82 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.61 Total: -32.52 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.18 Total: -4.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -2.33 Total: -8.73 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -2.29 Total: -2.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.25 -8.38 -38.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903738.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.645 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds