Wall clock time and date at job start Tue Mar 31 2020 11:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35696 * 116.99838 * 2 1 4 4 N 1.32270 * 119.67690 * 0.24599 * 3 2 1 5 5 C 1.31931 * 121.65618 * 180.28902 * 4 3 2 6 6 C 1.38172 * 120.82319 * 359.74967 * 5 4 3 7 7 Br 1.89102 * 120.36838 * 180.02562 * 6 5 4 8 8 C 1.38861 * 119.26561 * 359.97438 * 6 5 4 9 9 C 1.38413 * 118.47599 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.43548 * 180.02562 * 9 8 6 11 11 S 1.81398 * 109.47136 * 90.00271 * 10 9 8 12 12 C 1.81399 * 103.00088 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47141 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47162 * 120.00342 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00320 * 17 15 13 21 21 H 1.09005 * 109.46944 * 59.99747 * 1 2 3 22 22 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47232 * 300.00485 * 1 2 3 24 24 H 1.08005 * 119.59272 * 179.72947 * 5 4 3 25 25 H 1.08004 * 120.76097 * 180.02562 * 8 6 5 26 26 H 1.09002 * 109.47378 * 330.00401 * 10 9 8 27 27 H 1.09000 * 109.47022 * 210.00002 * 10 9 8 28 28 H 1.09000 * 109.47070 * 300.00061 * 12 11 10 29 29 H 1.09001 * 109.46593 * 60.00058 * 12 11 10 30 30 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3184 2.3143 0.0049 5 6 1.8763 3.5098 -0.0005 6 6 3.2509 3.6495 -0.0065 7 35 4.0370 5.3694 -0.0136 8 6 4.0488 2.5130 -0.0062 9 6 3.4322 1.2738 0.0007 10 6 4.2555 0.0115 0.0019 11 16 4.5926 -0.4889 1.7126 12 6 5.5757 -1.9998 1.5096 13 6 5.9417 -2.5468 2.8653 14 1 5.6158 -2.0364 3.7596 15 6 6.6925 -3.6990 2.9641 16 7 7.0898 -4.3203 1.8751 17 14 7.1467 -4.3767 4.6444 18 1 6.5827 -3.4990 5.7012 19 1 6.5930 -5.7467 4.7918 20 1 8.6251 -4.4236 4.7762 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.2508 4.3903 -0.0007 25 1 5.1258 2.5942 -0.0104 26 1 5.1974 0.1915 -0.5163 27 1 3.7064 -0.7808 -0.5069 28 1 4.9933 -2.7416 0.9632 29 1 6.4846 -1.7698 0.9536 30 1 7.6177 -5.1310 1.9445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903738.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:59 Heat of formation + Delta-G solvation = -28.590649 kcal Electronic energy + Delta-G solvation = -15734.302163 eV Core-core repulsion = 12894.535712 eV Total energy + Delta-G solvation = -2839.766452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89819 -39.04606 -35.29424 -34.99739 -33.65138 -30.69987 -30.50405 -28.80960 -28.06024 -25.25229 -24.17766 -23.18438 -19.52459 -18.69071 -18.46714 -17.38114 -17.11277 -16.48027 -16.27890 -15.62500 -15.40398 -14.95361 -14.75310 -14.52387 -14.40906 -14.22819 -13.78719 -13.31390 -12.76528 -12.72317 -12.66844 -12.53937 -12.22458 -11.74624 -11.61253 -11.49793 -10.94537 -10.78800 -10.74837 -10.55797 -9.41945 -8.47536 -8.33196 -6.46334 -0.31019 -0.09246 0.47994 1.11643 1.40011 1.40590 1.55268 1.99099 2.01947 2.36849 2.51861 3.01355 3.06618 3.52350 3.67182 3.70334 4.01920 4.28099 4.40952 4.42565 4.54818 4.69793 4.74380 4.78494 4.95147 4.95685 5.11694 5.57184 5.88814 6.06739 6.53447 6.60934 7.21687 8.78918 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.003446 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.316888 B = 8123.789441 C = 9281.095355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.339 3.661 4 N -0.537 5.537 5 C 0.177 3.823 6 C -0.186 4.186 7 Br -0.016 7.016 8 C 0.002 3.998 9 C -0.142 4.142 10 C -0.025 4.025 11 S -0.304 6.304 12 C 0.093 3.907 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.016 3.984 16 N -0.925 5.925 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.271 1.271 21 H 0.069 0.931 22 H 0.117 0.883 23 H 0.060 0.940 24 H 0.199 0.801 25 H 0.163 0.837 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.014 0.986 29 H 0.018 0.982 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 19.451 -7.220 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.158 3.842 4 N -0.261 5.261 5 C 0.018 3.982 6 C -0.268 4.268 7 Br 0.068 6.932 8 C -0.027 4.027 9 C -0.147 4.147 10 C -0.173 4.173 11 S -0.075 6.075 12 C -0.054 4.054 13 C -0.574 4.574 14 H 0.078 0.922 15 C -0.185 4.185 16 N -0.563 5.563 17 Si 0.799 3.201 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.197 1.197 21 H 0.087 0.913 22 H 0.135 0.865 23 H 0.079 0.921 24 H 0.216 0.784 25 H 0.180 0.820 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.032 0.968 29 H 0.037 0.963 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.558 20.008 -6.347 23.962 hybrid contribution 1.238 -1.540 -0.508 2.041 sum -10.320 18.467 -6.855 22.238 Atomic orbital electron populations 1.23150 0.75297 1.04782 1.02786 1.86346 1.24868 1.24077 1.86530 1.19847 0.88937 0.85371 0.89999 1.67570 1.39661 0.98447 1.20419 1.22973 0.91051 0.94625 0.89528 1.22727 0.96421 0.93193 1.14467 1.96735 1.82437 1.16160 1.97875 1.21491 1.01719 0.88972 0.90475 1.19315 0.91055 0.95127 1.09204 1.21904 1.02052 0.97006 0.96347 1.86637 1.71827 1.36564 1.12496 1.20752 0.94640 0.90084 0.99960 1.21003 1.34633 1.10093 0.91677 0.92176 1.25888 0.94863 0.96227 1.01505 1.70061 1.37143 1.19162 1.29972 0.85236 0.78274 0.78224 0.78355 1.19060 1.19766 1.19656 0.91268 0.86521 0.92089 0.78388 0.81979 0.88271 0.89444 0.96772 0.96333 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.38 113.37 1.18 1.90 16 2 O -0.31 -9.37 9.53 -90.16 -0.86 -10.23 16 3 C 0.34 9.97 7.47 84.78 0.63 10.61 16 4 N -0.54 -13.61 9.21 -308.86 -2.85 -16.46 16 5 C 0.18 3.64 10.94 84.66 0.93 4.57 16 6 C -0.19 -3.99 6.25 22.40 0.14 -3.85 16 7 Br -0.02 -0.29 33.73 -20.37 -0.69 -0.97 16 8 C 0.00 0.05 9.62 22.46 0.22 0.26 16 9 C -0.14 -4.24 5.17 -19.67 -0.10 -4.35 16 10 C -0.03 -0.87 5.87 71.24 0.42 -0.45 16 11 S -0.30 -13.57 21.64 -56.49 -1.22 -14.79 16 12 C 0.09 5.01 5.70 71.24 0.41 5.41 16 13 C -0.54 -30.96 9.13 25.60 0.23 -30.73 16 14 H 0.06 3.49 7.71 -2.91 -0.02 3.46 16 15 C 0.02 0.90 5.46 84.65 0.46 1.36 16 16 N -0.92 -54.47 13.29 21.45 0.28 -54.19 16 17 Si 0.98 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.07 1.28 8.11 -2.38 -0.02 1.26 16 22 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 25 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 26 H 0.10 3.12 8.10 -2.39 -0.02 3.10 16 27 H 0.09 3.08 7.54 -2.39 -0.02 3.06 16 28 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -65.28 302.64 2.35 -62.93 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.15 Total: 3.02 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.51 Total: -15.26 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -2.56 Total: -70.64 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.86 Total: -10.23 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -13.57 SS G_CDS: -1.22 Total: -14.79 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.97 kcal Total: -65.28 2.35 -62.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903738.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.336 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds