Wall clock time and date at job start Tue Mar 31 2020 10:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00027 * 2 1 4 4 C 1.52997 * 109.47426 * 293.95467 * 3 2 1 5 5 C 1.50693 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00207 * 89.99423 * 5 4 3 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 4 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00082 * 0.02562 * 9 8 7 11 11 C 1.46894 * 110.99897 * 123.95714 * 2 1 3 12 12 H 1.08996 * 110.64722 * 295.34748 * 11 2 1 13 13 C 1.54593 * 110.72728 * 172.19166 * 11 2 1 14 14 C 1.53995 * 105.14405 * 219.68380 * 13 11 2 15 15 N 1.47901 * 107.05606 * 358.77836 * 14 13 11 16 16 C 1.46897 * 111.00046 * 145.84331 * 15 14 13 17 17 C 1.53004 * 109.46996 * 69.87163 * 16 15 14 18 18 C 1.53007 * 109.46775 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.46806 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99999 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00109 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99687 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00312 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46966 * 119.99784 * 23 21 19 26 26 H 1.48491 * 109.47146 * 239.99803 * 23 21 19 27 27 C 1.48730 * 105.94624 * 25.19707 * 15 14 13 28 28 H 1.09008 * 109.46673 * 60.00078 * 1 2 3 29 29 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47236 * 299.99802 * 1 2 3 31 31 H 1.09004 * 109.46867 * 173.95031 * 3 2 1 32 32 H 1.09006 * 109.46938 * 53.95612 * 3 2 1 33 33 H 1.09000 * 109.47015 * 60.00085 * 4 3 2 34 34 H 1.09001 * 109.46743 * 299.99838 * 4 3 2 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.07997 * 120.00460 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.99643 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.00025 * 179.97438 * 10 9 8 40 40 H 1.09002 * 110.30637 * 338.60456 * 13 11 2 41 41 H 1.08998 * 110.30760 * 100.66870 * 13 11 2 42 42 H 1.09000 * 109.91674 * 118.12697 * 14 13 11 43 43 H 1.08994 * 109.91588 * 239.42090 * 14 13 11 44 44 H 1.09006 * 109.47135 * 189.86638 * 16 15 14 45 45 H 1.08998 * 109.47142 * 309.87071 * 16 15 14 46 46 H 1.08996 * 109.46911 * 299.99621 * 17 16 15 47 47 H 1.08998 * 109.47250 * 59.99974 * 17 16 15 48 48 H 1.08996 * 109.46996 * 299.99452 * 18 17 16 49 49 H 1.08998 * 109.47348 * 59.99917 * 18 17 16 50 50 H 0.96995 * 119.99706 * 180.02562 * 22 21 19 51 51 H 1.08995 * 110.84009 * 202.57962 * 27 15 14 52 52 H 1.09003 * 110.58451 * 79.38900 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1721 3.4641 -1.3184 6 6 3.4412 3.7168 -1.8046 7 6 3.9349 5.0080 -1.8101 8 6 3.1616 6.0457 -1.3243 9 6 1.8944 5.7923 -0.8335 10 6 1.4007 4.5012 -0.8281 11 6 1.9954 -0.7660 1.1375 12 1 1.7255 -0.2893 2.0798 13 6 3.5288 -0.9275 1.0257 14 6 3.8164 -2.3680 1.4881 15 7 2.5193 -2.9689 1.8675 16 6 2.4897 -4.4024 1.5479 17 6 3.4333 -5.1543 2.4888 18 6 3.4028 -6.6473 2.1554 19 6 4.3318 -7.3880 3.0825 20 1 4.8885 -6.8479 3.8339 21 6 4.4717 -8.7551 2.9706 22 7 3.7941 -9.4127 2.0552 23 14 5.6237 -9.6732 4.1193 24 1 6.2639 -8.7107 5.0515 25 1 4.8523 -10.6767 4.8959 26 1 6.6712 -10.3619 3.3233 27 6 1.4849 -2.2284 1.0971 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3443 0.1083 32 1 1.5611 1.9273 0.8310 33 1 0.5472 2.0846 -1.4264 34 1 2.0659 1.5016 -2.1491 35 1 4.0452 2.9062 -2.1847 36 1 4.9247 5.2060 -2.1941 37 1 3.5471 7.0545 -1.3289 38 1 1.2904 6.6031 -0.4536 39 1 0.4108 4.3031 -0.4443 40 1 3.8493 -0.7906 -0.0071 41 1 4.0329 -0.2123 1.6755 42 1 4.2650 -2.9368 0.6737 43 1 4.4856 -2.3552 2.3483 44 1 1.4751 -4.7813 1.6718 45 1 2.8099 -4.5514 0.5168 46 1 4.4477 -4.7754 2.3649 47 1 3.1131 -5.0053 3.5199 48 1 2.3884 -7.0265 2.2789 49 1 3.7233 -6.7960 1.1242 50 1 3.8923 -10.3745 1.9768 51 1 0.5106 -2.3092 1.5789 52 1 1.4387 -2.5915 0.0703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595750032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:26 Heat of formation + Delta-G solvation = 17.216828 kcal Electronic energy + Delta-G solvation = -25462.814032 eV Core-core repulsion = 22040.192646 eV Total energy + Delta-G solvation = -3422.621386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86315 -39.27007 -36.96894 -34.20716 -33.26687 -31.99184 -31.23623 -30.01074 -29.29620 -27.75091 -26.63061 -25.31642 -22.97125 -22.91414 -22.69725 -21.11655 -20.70243 -20.38357 -19.38297 -17.19950 -16.62682 -16.29201 -15.91883 -15.70856 -15.38433 -14.99452 -14.66922 -14.46853 -14.23561 -13.85463 -13.77014 -13.61837 -13.22182 -13.15296 -12.95374 -12.90754 -12.43992 -12.18091 -12.15188 -11.90961 -11.53316 -11.45248 -11.35339 -11.17526 -11.14451 -10.99581 -10.87887 -10.83111 -10.64248 -10.47768 -10.38425 -9.59742 -9.28890 -9.27413 -9.05038 -8.99770 -8.57004 -8.30943 -8.12846 -5.96073 -3.97773 0.99482 1.04897 3.33685 3.37479 3.40917 3.45686 3.60063 4.32869 4.45479 4.48510 4.55448 4.58302 4.67200 4.71539 4.78632 4.80464 4.92592 5.08170 5.14848 5.17343 5.21697 5.27249 5.30219 5.38942 5.39773 5.47431 5.59141 5.65617 5.70893 5.73233 5.74155 5.77075 5.80292 5.87116 5.88483 6.04609 6.10015 6.11759 6.16756 6.20283 6.29935 6.36966 6.65421 6.71701 6.77473 6.84089 6.88365 7.13277 7.27198 7.42585 7.73399 7.88449 8.04924 8.48587 9.09719 9.66016 11.15448 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001754 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.719235 B =15961.698082 C =16467.304899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.062 3.938 4 C -0.078 4.078 5 C -0.079 4.079 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.054 0.946 13 C -0.122 4.122 14 C 0.040 3.960 15 N -0.519 5.519 16 C 0.049 3.951 17 C -0.103 4.103 18 C 0.021 3.979 19 C -0.517 4.517 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.044 3.956 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.013 0.987 50 H 0.259 0.741 51 H 0.076 0.924 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 31.128 -8.346 32.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.116 4.116 5 C -0.079 4.079 6 C -0.133 4.133 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.138 4.138 10 C -0.136 4.136 11 C -0.029 4.029 12 H 0.072 0.928 13 C -0.161 4.161 14 C -0.088 4.088 15 N -0.243 5.243 16 C -0.078 4.078 17 C -0.141 4.141 18 C -0.017 4.017 19 C -0.555 4.555 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.085 4.085 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.432 30.742 -8.275 32.296 hybrid contribution 0.467 -0.286 0.444 0.704 sum -4.966 30.456 -7.831 31.837 Atomic orbital electron populations 1.22459 0.87413 1.02496 1.00517 1.62075 1.07882 1.13118 1.42895 1.22081 1.00712 0.87824 0.96006 1.20621 1.01168 0.91180 0.98637 1.19899 0.94464 0.95363 0.98205 1.21118 0.95338 0.96956 0.99900 1.21176 0.99853 0.92949 0.99676 1.21159 0.94746 0.99147 0.99436 1.21151 0.96037 0.96764 0.99816 1.21072 0.99893 0.92636 0.99997 1.22540 0.95084 0.93904 0.91362 0.92779 1.22474 0.94634 0.97140 1.01841 1.22807 0.92839 0.93324 0.99852 1.64799 1.02730 1.03881 1.52883 1.22455 1.01217 0.86020 0.98128 1.21600 0.96818 0.97597 0.98043 1.19088 0.97141 0.88710 0.96749 1.21300 1.24954 0.92239 1.17008 0.92631 1.25035 0.96074 0.97835 0.95637 1.69981 1.41836 1.07933 1.33873 0.86544 0.80793 0.79828 0.80895 1.19740 1.21038 1.21078 1.23220 0.96256 0.91744 0.97231 0.91270 0.90956 0.95617 0.90394 0.94802 0.90901 0.90013 0.85910 0.86085 0.86243 0.86191 0.86259 0.90561 0.91534 0.93361 0.90368 0.91304 0.95025 0.93576 0.92675 0.96618 0.96826 0.93141 0.90558 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.11 60.07 0.55 0.71 16 2 N -0.54 -5.22 4.60 -232.64 -1.07 -6.29 16 3 C 0.06 0.53 4.82 -3.83 -0.02 0.51 16 4 C -0.08 -0.59 5.27 -27.89 -0.15 -0.73 16 5 C -0.08 -0.62 5.13 -104.63 -0.54 -1.15 16 6 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 7 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 8 C -0.13 -0.87 10.05 -39.58 -0.40 -1.27 16 9 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 10 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 11 C 0.08 0.90 2.75 -65.85 -0.18 0.72 16 12 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 13 C -0.12 -1.39 5.36 -25.38 -0.14 -1.53 16 14 C 0.04 0.57 5.79 -2.75 -0.02 0.55 16 15 N -0.52 -8.11 5.26 -230.28 -1.21 -9.32 16 16 C 0.05 0.89 4.77 -3.82 -0.02 0.87 16 17 C -0.10 -2.20 5.21 -26.73 -0.14 -2.34 16 18 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 19 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 23 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.04 0.57 4.81 -1.78 -0.01 0.56 16 28 H 0.07 0.50 6.47 -51.92 -0.34 0.17 16 29 H 0.07 0.63 6.81 -51.93 -0.35 0.28 16 30 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.69 6.90 -51.93 -0.36 0.34 16 32 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.72 7.57 -51.93 -0.39 0.32 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 45 H 0.03 0.58 7.82 -51.93 -0.41 0.17 16 46 H 0.05 0.98 7.52 -51.93 -0.39 0.59 16 47 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 52 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -31.12 407.20 -13.28 -44.40 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -9.69 Total: -3.77 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -3.16 Total: -21.51 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -1.54 Total: -42.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.12 -13.28 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595750032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.621 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds