Wall clock time and date at job start Tue Mar 31 2020 10:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00027 * 2 1 4 4 C 1.52997 * 109.47426 * 293.95467 * 3 2 1 5 5 C 1.50693 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00207 * 89.99423 * 5 4 3 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 4 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 10 10 C 1.38234 * 120.00082 * 0.02562 * 9 8 7 11 11 C 1.46894 * 110.99897 * 123.95714 * 2 1 3 12 12 H 1.08996 * 110.64722 * 295.34748 * 11 2 1 13 13 C 1.54593 * 110.72728 * 172.19166 * 11 2 1 14 14 C 1.53995 * 105.14405 * 219.68380 * 13 11 2 15 15 N 1.47901 * 107.05606 * 358.77836 * 14 13 11 16 16 C 1.46897 * 111.00046 * 145.84331 * 15 14 13 17 17 C 1.53004 * 109.46996 * 69.87163 * 16 15 14 18 18 C 1.53007 * 109.46775 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.46806 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99999 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00109 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99687 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00312 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46966 * 119.99784 * 23 21 19 26 26 H 1.48491 * 109.47146 * 239.99803 * 23 21 19 27 27 C 1.48730 * 105.94624 * 25.19707 * 15 14 13 28 28 H 1.09008 * 109.46673 * 60.00078 * 1 2 3 29 29 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47236 * 299.99802 * 1 2 3 31 31 H 1.09004 * 109.46867 * 173.95031 * 3 2 1 32 32 H 1.09006 * 109.46938 * 53.95612 * 3 2 1 33 33 H 1.09000 * 109.47015 * 60.00085 * 4 3 2 34 34 H 1.09001 * 109.46743 * 299.99838 * 4 3 2 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.07997 * 120.00460 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.99643 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.00025 * 179.97438 * 10 9 8 40 40 H 1.09002 * 110.30637 * 338.60456 * 13 11 2 41 41 H 1.08998 * 110.30760 * 100.66870 * 13 11 2 42 42 H 1.09000 * 109.91674 * 118.12697 * 14 13 11 43 43 H 1.08994 * 109.91588 * 239.42090 * 14 13 11 44 44 H 1.09006 * 109.47135 * 189.86638 * 16 15 14 45 45 H 1.08998 * 109.47142 * 309.87071 * 16 15 14 46 46 H 1.08996 * 109.46911 * 299.99621 * 17 16 15 47 47 H 1.08998 * 109.47250 * 59.99974 * 17 16 15 48 48 H 1.08996 * 109.46996 * 299.99452 * 18 17 16 49 49 H 1.08998 * 109.47348 * 59.99917 * 18 17 16 50 50 H 0.96995 * 119.99706 * 180.02562 * 22 21 19 51 51 H 1.08995 * 110.84009 * 202.57962 * 27 15 14 52 52 H 1.09003 * 110.58451 * 79.38900 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1721 3.4641 -1.3184 6 6 3.4412 3.7168 -1.8046 7 6 3.9349 5.0080 -1.8101 8 6 3.1616 6.0457 -1.3243 9 6 1.8944 5.7923 -0.8335 10 6 1.4007 4.5012 -0.8281 11 6 1.9954 -0.7660 1.1375 12 1 1.7255 -0.2893 2.0798 13 6 3.5288 -0.9275 1.0257 14 6 3.8164 -2.3680 1.4881 15 7 2.5193 -2.9689 1.8675 16 6 2.4897 -4.4024 1.5479 17 6 3.4333 -5.1543 2.4888 18 6 3.4028 -6.6473 2.1554 19 6 4.3318 -7.3880 3.0825 20 1 4.8885 -6.8479 3.8339 21 6 4.4717 -8.7551 2.9706 22 7 3.7941 -9.4127 2.0552 23 14 5.6237 -9.6732 4.1193 24 1 6.2639 -8.7107 5.0515 25 1 4.8523 -10.6767 4.8959 26 1 6.6712 -10.3619 3.3233 27 6 1.4849 -2.2284 1.0971 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3443 0.1083 32 1 1.5611 1.9273 0.8310 33 1 0.5472 2.0846 -1.4264 34 1 2.0659 1.5016 -2.1491 35 1 4.0452 2.9062 -2.1847 36 1 4.9247 5.2060 -2.1941 37 1 3.5471 7.0545 -1.3289 38 1 1.2904 6.6031 -0.4536 39 1 0.4108 4.3031 -0.4443 40 1 3.8493 -0.7906 -0.0071 41 1 4.0329 -0.2123 1.6755 42 1 4.2650 -2.9368 0.6737 43 1 4.4856 -2.3552 2.3483 44 1 1.4751 -4.7813 1.6718 45 1 2.8099 -4.5514 0.5168 46 1 4.4477 -4.7754 2.3649 47 1 3.1131 -5.0053 3.5199 48 1 2.3884 -7.0265 2.2789 49 1 3.7233 -6.7960 1.1242 50 1 3.8923 -10.3745 1.9768 51 1 0.5106 -2.3092 1.5789 52 1 1.4387 -2.5915 0.0703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595750032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:26 Heat of formation + Delta-G solvation = 0.254014 kcal Electronic energy + Delta-G solvation = -25463.549594 eV Core-core repulsion = 22040.192646 eV Total energy + Delta-G solvation = -3423.356949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.63862 -40.03888 -37.95004 -35.93485 -34.35979 -33.49981 -31.74081 -31.43240 -30.12231 -28.66825 -28.07334 -26.46695 -24.56360 -23.49515 -23.42058 -22.40923 -21.57976 -21.55500 -20.61137 -18.50488 -17.74979 -17.43984 -17.03169 -16.49166 -16.32291 -16.13965 -15.84715 -15.62203 -15.38074 -14.88622 -14.70925 -14.43963 -14.25632 -14.10861 -13.96270 -13.78610 -13.67643 -13.49651 -13.26401 -12.97230 -12.88253 -12.69030 -12.56509 -12.33751 -12.21246 -12.11966 -12.05080 -11.96676 -11.76768 -11.67917 -11.53950 -11.40085 -11.35694 -11.06995 -10.55922 -9.79591 -9.59150 -9.39709 -9.32172 -8.20322 -6.31332 0.46577 0.52713 1.39826 1.40156 1.53930 2.40780 2.65855 2.92863 3.12641 3.25941 3.54462 3.72644 3.93194 3.99023 4.11052 4.15893 4.20239 4.21492 4.27853 4.32078 4.33505 4.37214 4.53131 4.54780 4.60033 4.66015 4.68362 4.68836 4.72064 4.74025 4.86024 4.95140 4.97561 4.99087 5.02836 5.05148 5.06699 5.10706 5.17594 5.21670 5.24609 5.28912 5.51894 5.60576 5.65986 5.72577 5.75739 5.85392 5.89754 5.99621 6.12522 6.14934 6.17633 6.27446 6.85315 7.37811 8.91823 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001754 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.719235 B =15961.698082 C =16467.304899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.067 3.933 4 C -0.069 4.069 5 C -0.090 4.090 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.135 4.135 9 C -0.128 4.128 10 C -0.129 4.129 11 C 0.089 3.911 12 H 0.053 0.947 13 C -0.113 4.113 14 C 0.036 3.964 15 N -0.527 5.527 16 C 0.062 3.938 17 C -0.086 4.086 18 C 0.025 3.975 19 C -0.542 4.542 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.277 1.277 27 C 0.046 3.954 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.047 0.953 47 H 0.051 0.949 48 H -0.007 1.007 49 H -0.010 1.010 50 H 0.264 0.736 51 H 0.082 0.918 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 32.780 -7.853 34.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.061 4.061 4 C -0.107 4.107 5 C -0.090 4.090 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.146 4.146 10 C -0.147 4.147 11 C -0.020 4.020 12 H 0.071 0.929 13 C -0.151 4.151 14 C -0.092 4.092 15 N -0.252 5.252 16 C -0.066 4.066 17 C -0.124 4.124 18 C -0.013 4.013 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.203 1.203 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.011 0.989 49 H 0.009 0.991 50 H 0.072 0.928 51 H 0.101 0.899 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.093 32.419 -7.786 33.728 hybrid contribution 0.332 -0.758 0.254 0.866 sum -4.761 31.661 -7.532 32.891 Atomic orbital electron populations 1.22500 0.86542 1.02500 1.01394 1.62071 1.08739 1.13761 1.41978 1.22047 1.00383 0.87075 0.96563 1.20521 1.01459 0.90937 0.97784 1.19981 0.94734 0.95549 0.98745 1.21301 0.95590 0.97535 1.00274 1.21438 1.00665 0.92888 0.99660 1.21461 0.94796 1.00030 0.99010 1.21439 0.96387 0.97166 0.99625 1.21285 1.00436 0.92866 1.00093 1.22391 0.94796 0.92884 0.91973 0.92874 1.22405 0.94956 0.95454 1.02292 1.22858 0.92040 0.94862 0.99422 1.64726 1.04263 1.02469 1.53699 1.22161 1.00016 0.87646 0.96766 1.21335 0.97877 0.94697 0.98535 1.18986 0.95244 0.91948 0.95097 1.21714 1.25619 0.93110 1.17603 0.92341 1.26000 0.97747 0.98851 0.97314 1.70107 1.43259 1.08482 1.35499 0.85375 0.78479 0.78375 0.78678 1.18676 1.20240 1.20265 1.23240 0.95803 0.92592 0.96561 0.89936 0.91413 0.95192 0.90776 0.94864 0.90287 0.90470 0.85450 0.84674 0.84493 0.84509 0.85261 0.90148 0.90087 0.94432 0.90655 0.91444 0.95535 0.93439 0.93041 0.98904 0.99148 0.92763 0.89930 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.11 127.69 1.16 1.44 16 2 N -0.54 -9.70 4.60 -889.95 -4.09 -13.80 16 3 C 0.07 1.04 4.82 86.30 0.42 1.45 16 4 C -0.07 -0.94 5.27 29.84 0.16 -0.79 16 5 C -0.09 -1.30 5.13 -19.87 -0.10 -1.40 16 6 C -0.13 -1.86 9.70 22.27 0.22 -1.65 16 7 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 8 C -0.14 -1.65 10.05 22.27 0.22 -1.43 16 9 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 10 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 11 C 0.09 1.86 2.75 46.12 0.13 1.99 16 12 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 13 C -0.11 -2.41 5.36 31.47 0.17 -2.24 16 14 C 0.04 1.01 5.79 86.45 0.50 1.51 16 15 N -0.53 -16.24 5.26 -882.47 -4.64 -20.88 16 16 C 0.06 2.28 4.77 86.31 0.41 2.69 16 17 C -0.09 -3.78 5.21 30.60 0.16 -3.62 16 18 C 0.02 1.36 4.97 29.85 0.15 1.51 16 19 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 20 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 23 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.05 1.16 4.81 86.61 0.42 1.57 16 28 H 0.08 1.04 6.47 -2.38 -0.02 1.02 16 29 H 0.07 1.10 6.81 -2.39 -0.02 1.08 16 30 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 1.21 6.90 -2.38 -0.02 1.19 16 32 H 0.03 0.53 8.12 -2.38 -0.02 0.51 16 33 H 0.08 0.96 6.50 -2.39 -0.02 0.95 16 34 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.08 1.67 7.92 -2.39 -0.02 1.65 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.11 7.57 -2.39 -0.02 1.09 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.46 8.11 -2.38 -0.02 2.44 16 45 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 46 H 0.05 2.03 7.52 -2.39 -0.02 2.02 16 47 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 49 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 50 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 51 H 0.08 1.97 7.91 -2.39 -0.02 1.95 16 52 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 Total: -1.00 -66.44 407.20 -0.21 -66.66 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.84 Total: 12.99 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 5.37 Total: -34.61 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -8.45 Total: -92.22 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.44 -0.21 -66.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595750032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.910 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds