Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99528 * 2 1 4 4 C 1.53000 * 109.47341 * 293.95360 * 3 2 1 5 5 C 1.50694 * 109.47031 * 180.02562 * 4 3 2 6 6 C 1.38245 * 119.99803 * 269.72099 * 5 4 3 7 7 C 1.38231 * 119.99907 * 179.76534 * 6 5 4 8 8 C 1.38241 * 119.99977 * 0.51524 * 7 6 5 9 9 C 1.38240 * 119.99886 * 359.73875 * 8 7 6 10 10 C 1.38233 * 120.00238 * 90.00435 * 5 4 3 11 11 C 1.46904 * 111.00050 * 123.95308 * 2 1 3 12 12 H 1.09000 * 110.77952 * 292.28375 * 11 2 1 13 13 C 1.54590 * 110.72317 * 55.52901 * 11 2 1 14 14 C 1.53997 * 105.13682 * 140.31502 * 13 11 2 15 15 N 1.47897 * 107.22329 * 1.12770 * 14 13 11 16 16 C 1.46902 * 110.99711 * 214.25266 * 15 14 13 17 17 C 1.52997 * 109.47298 * 175.94121 * 16 15 14 18 18 C 1.52997 * 109.47783 * 184.70872 * 17 16 15 19 19 C 1.50696 * 109.47760 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99689 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00283 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00084 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47235 * 89.99258 * 23 21 19 25 25 H 1.48496 * 109.47372 * 209.99433 * 23 21 19 26 26 H 1.48503 * 109.47010 * 329.99764 * 23 21 19 27 27 C 1.48806 * 105.68184 * 334.90092 * 15 14 13 28 28 H 1.08999 * 109.47659 * 291.25403 * 1 2 3 29 29 H 1.08995 * 109.47223 * 51.26129 * 1 2 3 30 30 H 1.09008 * 109.46691 * 171.25969 * 1 2 3 31 31 H 1.09001 * 109.47015 * 53.95491 * 3 2 1 32 32 H 1.09001 * 109.47012 * 173.95066 * 3 2 1 33 33 H 1.08997 * 109.46744 * 300.00262 * 4 3 2 34 34 H 1.09001 * 109.46786 * 59.99829 * 4 3 2 35 35 H 1.07998 * 119.99659 * 0.02562 * 6 5 4 36 36 H 1.07992 * 120.00105 * 180.23053 * 7 6 5 37 37 H 1.07996 * 120.00027 * 179.71926 * 8 7 6 38 38 H 1.08000 * 119.99525 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.99966 * 359.97438 * 10 5 4 40 40 H 1.08998 * 110.31235 * 21.40391 * 13 11 2 41 41 H 1.09000 * 110.39602 * 259.27112 * 13 11 2 42 42 H 1.08999 * 109.91414 * 120.58054 * 14 13 11 43 43 H 1.08999 * 109.91606 * 241.67643 * 14 13 11 44 44 H 1.09007 * 109.47410 * 295.93937 * 16 15 14 45 45 H 1.09003 * 109.47339 * 55.94049 * 16 15 14 46 46 H 1.09004 * 109.46989 * 304.71303 * 17 16 15 47 47 H 1.09003 * 109.47134 * 64.70444 * 17 16 15 48 48 H 1.09012 * 109.46943 * 300.00212 * 18 17 16 49 49 H 1.09003 * 109.47134 * 59.99573 * 18 17 16 50 50 H 0.96994 * 120.00521 * 179.97438 * 22 21 19 51 51 H 1.08993 * 110.52273 * 280.54577 * 27 15 14 52 52 H 1.09003 * 110.83938 * 157.55760 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1718 3.4642 -1.3184 6 6 1.3963 4.5027 -0.8376 7 6 1.8939 5.7923 -0.8333 8 6 3.1630 6.0451 -1.3196 9 6 3.9365 5.0074 -1.8053 10 6 3.4408 3.7170 -1.8048 11 6 1.9955 -0.7660 1.1376 12 1 1.7733 -0.2628 2.0786 13 6 1.4275 -2.2038 1.1388 14 6 2.6077 -3.1020 1.5532 15 7 3.7665 -2.2166 1.7995 16 6 5.0219 -2.8714 1.4080 17 6 6.1840 -1.8916 1.5817 18 6 7.4733 -2.5324 1.0643 19 6 8.6181 -1.5675 1.2360 20 1 8.4434 -0.5942 1.6704 21 6 9.8882 -1.9267 0.8376 22 7 10.1008 -3.1117 0.3082 23 14 11.3070 -0.7304 1.0499 24 1 11.9343 -0.9373 2.3799 25 1 12.3155 -0.9645 -0.0147 26 1 10.7993 0.6618 0.9533 27 6 3.5201 -0.9957 0.9852 28 1 -0.3634 0.3725 0.9577 29 1 -0.3633 0.6430 -0.8015 30 1 -0.3633 -1.0158 -0.1562 31 1 1.5610 1.9273 0.8309 32 1 3.0796 1.3445 0.1083 33 1 2.0657 1.5016 -2.1491 34 1 0.5470 2.0844 -1.4265 35 1 0.4033 4.3057 -0.4615 36 1 1.2895 6.6030 -0.4542 37 1 3.5500 7.0534 -1.3204 38 1 4.9278 5.2051 -2.1856 39 1 4.0451 2.9063 -2.1843 40 1 1.0787 -2.4736 0.1420 41 1 0.6147 -2.2906 1.8598 42 1 2.3574 -3.6478 2.4629 43 1 2.8400 -3.8033 0.7517 44 1 5.1871 -3.7462 2.0370 45 1 4.9603 -3.1807 0.3645 46 1 5.9791 -0.9813 1.0182 47 1 6.2982 -1.6470 2.6378 48 1 7.6782 -3.4427 1.6279 49 1 7.3591 -2.7769 0.0082 50 1 10.9943 -3.3643 0.0275 51 1 3.7800 -1.1735 -0.0582 52 1 4.0784 -0.1470 1.3803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595750033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = 18.442506 kcal Electronic energy + Delta-G solvation = -26095.186618 eV Core-core repulsion = 22672.618382 eV Total energy + Delta-G solvation = -3422.568236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74830 -39.19000 -36.90620 -34.22559 -33.20892 -31.96295 -31.05590 -29.81671 -28.93181 -28.41593 -25.99641 -25.53489 -23.26244 -22.74264 -22.37178 -21.01753 -20.59793 -20.17080 -19.57953 -17.06898 -16.52334 -16.22059 -15.82549 -15.66829 -15.22618 -14.94819 -14.70707 -14.42656 -14.09185 -13.80602 -13.65899 -13.55263 -13.16425 -13.07045 -12.95031 -12.76212 -12.39472 -12.22068 -12.07680 -11.68690 -11.49110 -11.40869 -11.32083 -11.14626 -11.07337 -10.95898 -10.76664 -10.73458 -10.69265 -10.49007 -10.36950 -9.60167 -9.29568 -9.09307 -9.01491 -8.87815 -8.48884 -8.30906 -8.11356 -5.96232 -3.98115 1.16798 1.23004 3.34471 3.40390 3.44067 3.51179 3.70863 4.38286 4.50790 4.53250 4.62708 4.73137 4.75340 4.84655 4.89381 4.97812 5.03242 5.06673 5.24061 5.25124 5.34701 5.35543 5.38848 5.39545 5.44796 5.56739 5.71154 5.72608 5.76022 5.80089 5.83563 5.84054 5.88870 5.90930 5.94769 6.08075 6.13048 6.14982 6.28624 6.35376 6.35482 6.47149 6.73130 6.79702 6.83227 6.90030 6.91575 7.11596 7.27857 7.42916 7.72322 7.87451 8.04420 8.47922 9.09055 9.65655 11.15293 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.003296 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.330309 B = 8493.425272 C =11613.684892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.060 3.940 4 C -0.077 4.077 5 C -0.080 4.080 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.113 4.113 11 C 0.079 3.921 12 H 0.054 0.946 13 C -0.122 4.122 14 C 0.036 3.964 15 N -0.519 5.519 16 C 0.049 3.951 17 C -0.106 4.106 18 C 0.022 3.978 19 C -0.517 4.517 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.048 3.952 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.013 0.987 50 H 0.260 0.740 51 H 0.056 0.944 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 11.871 -2.826 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.135 4.135 10 C -0.131 4.131 11 C -0.030 4.030 12 H 0.072 0.928 13 C -0.160 4.160 14 C -0.092 4.092 15 N -0.243 5.243 16 C -0.078 4.078 17 C -0.144 4.144 18 C -0.015 4.015 19 C -0.556 4.556 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.080 4.080 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.531 11.630 -2.770 25.506 hybrid contribution 0.598 0.780 -0.011 0.983 sum -21.932 12.410 -2.781 25.353 Atomic orbital electron populations 1.22447 0.87701 1.02435 1.00214 1.62056 1.07573 1.13404 1.42848 1.22110 1.01067 0.87611 0.96020 1.20617 1.00860 0.91320 0.98670 1.19879 0.94525 0.95256 0.98413 1.21031 0.99745 0.92663 1.00285 1.21120 0.96056 0.96735 1.00038 1.21158 0.94723 0.99146 0.99424 1.21212 0.99858 0.92942 0.99463 1.21171 0.95277 0.97090 0.99519 1.22566 0.95355 0.93718 0.91383 0.92787 1.22463 0.97800 0.93969 1.01788 1.22809 0.90739 0.95503 1.00192 1.64853 1.02117 1.05157 1.52207 1.22460 0.89037 0.98129 0.98209 1.21661 0.94534 0.97274 1.00928 1.19072 0.90359 0.96027 0.96091 1.21250 0.92899 1.01102 1.40310 0.92725 1.25024 0.98890 0.95253 0.95335 1.69965 1.21704 1.19741 1.42222 0.86611 0.82238 0.81510 0.77754 1.20668 1.21255 1.19885 1.23192 0.93427 0.94324 0.97026 0.95760 0.91269 0.91219 0.94743 0.90037 0.89956 0.91063 0.86404 0.86298 0.86269 0.85947 0.85678 0.90556 0.91535 0.90744 0.93713 0.91121 0.95043 0.93431 0.92758 0.96637 0.96822 0.93063 0.92543 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.04 60.07 0.54 0.71 16 2 N -0.53 -5.70 4.61 -232.65 -1.07 -6.77 16 3 C 0.06 0.62 4.84 -3.82 -0.02 0.60 16 4 C -0.08 -0.71 5.29 -27.89 -0.15 -0.85 16 5 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 6 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 7 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 8 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 9 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 10 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 11 C 0.08 0.94 2.75 -65.85 -0.18 0.75 16 12 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 13 C -0.12 -1.33 5.51 -25.38 -0.14 -1.47 16 14 C 0.04 0.47 6.69 -2.75 -0.02 0.45 16 15 N -0.52 -8.18 5.36 -230.22 -1.23 -9.41 16 16 C 0.05 0.89 4.84 -3.82 -0.02 0.88 16 17 C -0.11 -2.27 5.10 -26.73 -0.14 -2.41 16 18 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 19 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 20 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 23 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 27 C 0.05 0.71 4.02 -1.75 -0.01 0.70 16 28 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 29 H 0.07 0.51 6.12 -51.93 -0.32 0.20 16 30 H 0.07 0.56 6.80 -51.92 -0.35 0.21 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 32 H 0.08 0.96 6.89 -51.93 -0.36 0.61 16 33 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.07 0.57 6.33 -51.93 -0.33 0.24 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.03 0.58 7.98 -51.93 -0.41 0.17 16 46 H 0.05 1.01 6.68 -51.93 -0.35 0.66 16 47 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 52 H 0.08 1.23 7.22 -51.93 -0.37 0.85 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -31.05 405.05 -13.22 -44.27 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -9.57 Total: -1.64 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.17 Total: -22.88 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -1.57 Total: -42.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.05 -13.22 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595750033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.714 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds