Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99528 * 2 1 4 4 C 1.53000 * 109.47341 * 293.95360 * 3 2 1 5 5 C 1.50694 * 109.47031 * 180.02562 * 4 3 2 6 6 C 1.38245 * 119.99803 * 269.72099 * 5 4 3 7 7 C 1.38231 * 119.99907 * 179.76534 * 6 5 4 8 8 C 1.38241 * 119.99977 * 0.51524 * 7 6 5 9 9 C 1.38240 * 119.99886 * 359.73875 * 8 7 6 10 10 C 1.38233 * 120.00238 * 90.00435 * 5 4 3 11 11 C 1.46904 * 111.00050 * 123.95308 * 2 1 3 12 12 H 1.09000 * 110.77952 * 292.28375 * 11 2 1 13 13 C 1.54590 * 110.72317 * 55.52901 * 11 2 1 14 14 C 1.53997 * 105.13682 * 140.31502 * 13 11 2 15 15 N 1.47897 * 107.22329 * 1.12770 * 14 13 11 16 16 C 1.46902 * 110.99711 * 214.25266 * 15 14 13 17 17 C 1.52997 * 109.47298 * 175.94121 * 16 15 14 18 18 C 1.52997 * 109.47783 * 184.70872 * 17 16 15 19 19 C 1.50696 * 109.47760 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99689 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00283 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00084 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00201 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47235 * 89.99258 * 23 21 19 25 25 H 1.48496 * 109.47372 * 209.99433 * 23 21 19 26 26 H 1.48503 * 109.47010 * 329.99764 * 23 21 19 27 27 C 1.48806 * 105.68184 * 334.90092 * 15 14 13 28 28 H 1.08999 * 109.47659 * 291.25403 * 1 2 3 29 29 H 1.08995 * 109.47223 * 51.26129 * 1 2 3 30 30 H 1.09008 * 109.46691 * 171.25969 * 1 2 3 31 31 H 1.09001 * 109.47015 * 53.95491 * 3 2 1 32 32 H 1.09001 * 109.47012 * 173.95066 * 3 2 1 33 33 H 1.08997 * 109.46744 * 300.00262 * 4 3 2 34 34 H 1.09001 * 109.46786 * 59.99829 * 4 3 2 35 35 H 1.07998 * 119.99659 * 0.02562 * 6 5 4 36 36 H 1.07992 * 120.00105 * 180.23053 * 7 6 5 37 37 H 1.07996 * 120.00027 * 179.71926 * 8 7 6 38 38 H 1.08000 * 119.99525 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.99966 * 359.97438 * 10 5 4 40 40 H 1.08998 * 110.31235 * 21.40391 * 13 11 2 41 41 H 1.09000 * 110.39602 * 259.27112 * 13 11 2 42 42 H 1.08999 * 109.91414 * 120.58054 * 14 13 11 43 43 H 1.08999 * 109.91606 * 241.67643 * 14 13 11 44 44 H 1.09007 * 109.47410 * 295.93937 * 16 15 14 45 45 H 1.09003 * 109.47339 * 55.94049 * 16 15 14 46 46 H 1.09004 * 109.46989 * 304.71303 * 17 16 15 47 47 H 1.09003 * 109.47134 * 64.70444 * 17 16 15 48 48 H 1.09012 * 109.46943 * 300.00212 * 18 17 16 49 49 H 1.09003 * 109.47134 * 59.99573 * 18 17 16 50 50 H 0.96994 * 120.00521 * 179.97438 * 22 21 19 51 51 H 1.08993 * 110.52273 * 280.54577 * 27 15 14 52 52 H 1.09003 * 110.83938 * 157.55760 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1718 3.4642 -1.3184 6 6 1.3963 4.5027 -0.8376 7 6 1.8939 5.7923 -0.8333 8 6 3.1630 6.0451 -1.3196 9 6 3.9365 5.0074 -1.8053 10 6 3.4408 3.7170 -1.8048 11 6 1.9955 -0.7660 1.1376 12 1 1.7733 -0.2628 2.0786 13 6 1.4275 -2.2038 1.1388 14 6 2.6077 -3.1020 1.5532 15 7 3.7665 -2.2166 1.7995 16 6 5.0219 -2.8714 1.4080 17 6 6.1840 -1.8916 1.5817 18 6 7.4733 -2.5324 1.0643 19 6 8.6181 -1.5675 1.2360 20 1 8.4434 -0.5942 1.6704 21 6 9.8882 -1.9267 0.8376 22 7 10.1008 -3.1117 0.3082 23 14 11.3070 -0.7304 1.0499 24 1 11.9343 -0.9373 2.3799 25 1 12.3155 -0.9645 -0.0147 26 1 10.7993 0.6618 0.9533 27 6 3.5201 -0.9957 0.9852 28 1 -0.3634 0.3725 0.9577 29 1 -0.3633 0.6430 -0.8015 30 1 -0.3633 -1.0158 -0.1562 31 1 1.5610 1.9273 0.8309 32 1 3.0796 1.3445 0.1083 33 1 2.0657 1.5016 -2.1491 34 1 0.5470 2.0844 -1.4265 35 1 0.4033 4.3057 -0.4615 36 1 1.2895 6.6030 -0.4542 37 1 3.5500 7.0534 -1.3204 38 1 4.9278 5.2051 -2.1856 39 1 4.0451 2.9063 -2.1843 40 1 1.0787 -2.4736 0.1420 41 1 0.6147 -2.2906 1.8598 42 1 2.3574 -3.6478 2.4629 43 1 2.8400 -3.8033 0.7517 44 1 5.1871 -3.7462 2.0370 45 1 4.9603 -3.1807 0.3645 46 1 5.9791 -0.9813 1.0182 47 1 6.2982 -1.6470 2.6378 48 1 7.6782 -3.4427 1.6279 49 1 7.3591 -2.7769 0.0082 50 1 10.9943 -3.3643 0.0275 51 1 3.7800 -1.1735 -0.0582 52 1 4.0784 -0.1470 1.3803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595750033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = 1.195161 kcal Electronic energy + Delta-G solvation = -26095.934519 eV Core-core repulsion = 22672.618382 eV Total energy + Delta-G solvation = -3423.316137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65495 -40.05582 -37.94392 -35.97017 -34.43946 -33.50988 -31.75730 -31.24307 -29.93489 -29.30900 -27.75286 -26.39046 -24.79530 -23.51836 -23.44585 -22.25696 -21.53291 -21.44431 -20.83113 -18.52553 -17.78669 -17.29699 -17.02278 -16.54791 -16.45555 -16.10488 -16.03754 -15.53002 -15.26411 -14.91255 -14.75689 -14.35239 -14.25189 -14.13902 -14.10780 -13.78341 -13.66258 -13.59497 -13.28096 -12.91849 -12.85592 -12.60415 -12.54486 -12.34016 -12.27780 -12.20743 -12.10758 -11.90805 -11.76236 -11.66953 -11.52010 -11.46260 -11.34616 -11.09382 -10.56566 -9.81481 -9.60654 -9.40747 -9.29993 -8.21384 -6.32628 0.44789 0.50800 1.38527 1.40287 1.51459 2.39770 2.65936 2.91281 3.11489 3.26272 3.56067 3.71863 3.90758 3.99452 4.11140 4.15006 4.18215 4.19903 4.27049 4.30982 4.31687 4.35592 4.50158 4.53448 4.60147 4.66421 4.67345 4.67810 4.73286 4.75650 4.86531 4.93816 4.95500 4.97611 5.02313 5.05645 5.07726 5.11296 5.14026 5.19512 5.22175 5.29135 5.49266 5.58626 5.64229 5.70859 5.74125 5.83186 5.88418 5.99606 6.12418 6.13917 6.18184 6.26146 6.83542 7.36513 8.90705 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.003296 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.330309 B = 8493.425272 C =11613.684892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.065 3.935 4 C -0.067 4.067 5 C -0.091 4.091 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.134 4.134 9 C -0.132 4.132 10 C -0.134 4.134 11 C 0.087 3.913 12 H 0.053 0.947 13 C -0.111 4.111 14 C 0.032 3.968 15 N -0.526 5.526 16 C 0.062 3.938 17 C -0.090 4.090 18 C 0.027 3.973 19 C -0.543 4.543 20 H 0.057 0.943 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 C 0.049 3.951 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.046 0.954 47 H 0.050 0.950 48 H -0.007 1.007 49 H -0.011 1.011 50 H 0.264 0.736 51 H 0.039 0.961 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.670 13.331 -2.263 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.267 5.267 3 C -0.063 4.063 4 C -0.105 4.105 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.150 4.150 10 C -0.152 4.152 11 C -0.022 4.022 12 H 0.071 0.929 13 C -0.149 4.149 14 C -0.095 4.095 15 N -0.251 5.251 16 C -0.067 4.067 17 C -0.128 4.128 18 C -0.010 4.010 19 C -0.581 4.581 20 H 0.075 0.925 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 C -0.079 4.079 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.011 0.989 49 H 0.007 0.993 50 H 0.073 0.927 51 H 0.058 0.942 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.343 13.093 -2.204 27.728 hybrid contribution 1.141 0.323 -0.198 1.202 sum -23.202 13.415 -2.402 26.908 Atomic orbital electron populations 1.22520 0.85840 1.03363 1.01036 1.62039 1.09201 1.13324 1.42170 1.22022 0.99702 0.87774 0.96794 1.20523 1.01697 0.90727 0.97517 1.20006 0.94493 0.95884 0.98751 1.21304 1.00480 0.92605 0.99885 1.21469 0.96148 0.97359 0.99401 1.21460 0.94943 0.99830 0.98964 1.21423 1.00557 0.93074 0.99937 1.21295 0.95945 0.97413 1.00590 1.22425 0.93161 0.94756 0.91837 0.92873 1.22428 0.97350 0.92345 1.02823 1.22930 0.90238 0.95509 1.00872 1.64806 1.01991 1.05921 1.52344 1.22185 0.89370 0.97235 0.97868 1.21395 0.93624 0.97599 1.00141 1.18957 0.92548 0.95167 0.94349 1.21663 0.94113 1.01650 1.40704 0.92458 1.25986 1.01961 0.97173 0.94668 1.70094 1.22677 1.21690 1.42879 0.85449 0.78333 0.79184 0.78115 1.19620 1.20500 1.18840 1.23139 0.95793 0.93381 0.95614 0.95155 0.90043 0.90409 0.94479 0.92338 0.90938 0.89364 0.84519 0.83960 0.84378 0.85242 0.86372 0.89889 0.89216 0.89448 0.93965 0.90993 0.95763 0.93525 0.93088 0.98881 0.99255 0.92702 0.94242 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.04 127.69 1.15 1.44 16 2 N -0.54 -10.86 4.61 -889.96 -4.10 -14.96 16 3 C 0.06 1.32 4.84 86.30 0.42 1.73 16 4 C -0.07 -1.18 5.29 29.85 0.16 -1.03 16 5 C -0.09 -1.76 5.13 -19.87 -0.10 -1.87 16 6 C -0.12 -2.09 9.70 22.27 0.22 -1.88 16 7 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 8 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 9 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 10 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 11 C 0.09 1.97 2.75 46.12 0.13 2.10 16 12 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 13 C -0.11 -2.17 5.51 31.47 0.17 -1.99 16 14 C 0.03 0.79 6.69 86.45 0.58 1.37 16 15 N -0.53 -16.47 5.36 -882.27 -4.73 -21.19 16 16 C 0.06 2.29 4.84 86.30 0.42 2.71 16 17 C -0.09 -3.97 5.10 30.59 0.16 -3.82 16 18 C 0.03 1.51 4.97 29.85 0.15 1.66 16 19 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 21 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 22 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 23 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.05 1.45 4.02 86.59 0.35 1.80 16 28 H 0.03 0.41 8.13 -2.39 -0.02 0.39 16 29 H 0.08 0.97 6.12 -2.39 -0.01 0.96 16 30 H 0.08 1.00 6.80 -2.38 -0.02 0.99 16 31 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.06 1.44 6.89 -2.39 -0.02 1.43 16 33 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 34 H 0.09 1.24 6.33 -2.39 -0.02 1.22 16 35 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.08 1.54 7.30 -2.39 -0.02 1.52 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 1.06 7.67 -2.39 -0.02 1.04 16 44 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 45 H 0.02 0.93 7.98 -2.39 -0.02 0.91 16 46 H 0.05 2.05 6.68 -2.39 -0.02 2.03 16 47 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 48 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 49 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 50 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.04 1.30 8.01 -2.39 -0.02 1.28 16 52 H 0.07 2.09 7.22 -2.39 -0.02 2.07 16 Total: -1.00 -67.58 405.05 -0.29 -67.87 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.85 Total: 16.88 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 5.37 Total: -38.16 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -8.54 Total: -93.96 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.58 -0.29 -67.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595750033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.069 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds