Wall clock time and date at job start Tue Mar 31 2020 11:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47082 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47281 * 119.99304 * 3 2 1 6 6 H 1.48501 * 109.46864 * 239.99686 * 3 2 1 7 7 C 1.39037 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99565 * 172.69245 * 7 2 1 9 9 N 1.36886 * 119.99918 * 352.69208 * 7 2 1 10 10 C 1.34775 * 119.99821 * 149.94200 * 9 7 2 11 11 O 1.21603 * 120.00343 * 356.62102 * 10 9 7 12 12 C 1.47595 * 120.00111 * 176.61570 * 10 9 7 13 13 C 1.39727 * 120.15841 * 47.06544 * 12 10 9 14 14 C 1.37948 * 119.88000 * 179.69936 * 13 12 10 15 15 Cl 1.73606 * 119.89595 * 180.27819 * 14 13 12 16 16 C 1.38564 * 120.20977 * 0.58093 * 14 13 12 17 17 C 1.38312 * 120.32220 * 359.71767 * 16 14 13 18 18 Cl 1.73605 * 119.93920 * 180.02562 * 17 16 14 19 19 C 1.38408 * 120.11591 * 359.97438 * 17 16 14 20 20 F 1.35097 * 120.10628 * 179.97438 * 19 17 16 21 21 C 1.46506 * 120.00281 * 329.94927 * 9 7 2 22 22 C 1.52991 * 117.49640 * 313.50274 * 21 9 7 23 23 C 1.53001 * 117.49565 * 244.84091 * 21 9 7 24 24 H 0.97000 * 120.00471 * 355.04099 * 1 2 3 25 25 H 1.08008 * 120.05997 * 359.97438 * 13 12 10 26 26 H 1.08001 * 119.84092 * 179.69735 * 16 14 13 27 27 H 1.08996 * 115.54863 * 99.17019 * 21 9 7 28 28 H 1.09005 * 117.50336 * 359.97438 * 22 21 9 29 29 H 1.09000 * 117.50300 * 145.01821 * 22 21 9 30 30 H 1.08995 * 117.49608 * 214.97443 * 23 21 9 31 31 H 1.08998 * 117.50077 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 1.2827 2.7465 -0.0006 5 1 3.1013 1.6966 1.2126 6 1 3.1015 1.6963 -1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0823 -1.2078 -0.1184 9 7 1.3329 -2.3847 0.1519 10 6 1.8070 -3.5105 -0.4175 11 8 2.8012 -3.4663 -1.1163 12 6 1.1196 -4.7971 -0.1929 13 6 -0.2690 -4.8832 -0.3228 14 6 -0.9049 -6.0901 -0.1176 15 17 -2.6293 -6.1991 -0.2860 16 6 -0.1723 -7.2141 0.2287 17 6 1.2018 -7.1372 0.3657 18 17 2.1099 -8.5519 0.7992 19 6 1.8543 -5.9346 0.1567 20 9 3.1965 -5.8595 0.2910 21 6 0.0938 -2.4245 0.9326 22 6 0.0920 -1.7208 2.2911 23 6 0.0968 -3.2500 2.2208 24 1 -0.4851 0.8369 0.0726 25 1 -0.8429 -4.0074 -0.5878 26 1 -0.6769 -8.1548 0.3927 27 1 -0.8285 -2.4006 0.3522 28 1 1.0128 -1.2286 2.6043 29 1 -0.8316 -1.2343 2.6048 30 1 -0.8237 -3.7688 2.4882 31 1 1.0205 -3.7638 2.4872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:42 Heat of formation + Delta-G solvation = -24.985881 kcal Electronic energy + Delta-G solvation = -22236.305975 eV Core-core repulsion = 18485.619512 eV Total energy + Delta-G solvation = -3750.686463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.013 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.70476 -39.76201 -38.22823 -36.80625 -36.34632 -36.07076 -33.18629 -31.63482 -30.79435 -30.17585 -25.64755 -23.81451 -22.69192 -21.80149 -21.40071 -19.75722 -17.65673 -17.00623 -16.97711 -16.60885 -15.72113 -15.41891 -15.25863 -14.69923 -14.40664 -14.10691 -13.52628 -13.47115 -13.28500 -13.20021 -12.56525 -12.32844 -12.21887 -11.75345 -11.43261 -11.17336 -11.11272 -11.01057 -10.91576 -10.80602 -10.63627 -10.45757 -9.96978 -9.57688 -9.00996 -8.95412 -8.62016 -8.52487 -7.84592 -6.44831 -4.08247 0.78823 0.86371 1.69667 2.15485 3.03652 3.17452 3.18943 3.22873 3.80125 3.97562 4.10324 4.46563 4.56625 4.75796 4.86851 4.96333 5.09460 5.35370 5.49606 5.66490 5.72661 5.85929 5.95532 6.05388 6.12120 6.19999 6.48533 6.63524 6.81769 7.00289 7.41561 7.95635 8.29631 8.98627 9.17890 9.74258 10.58423 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.005164 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.775400 B = 5420.550157 C = 6480.087502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.045 3.955 3 Si 0.925 3.075 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.310 4.310 8 H 0.098 0.902 9 N -0.398 5.398 10 C 0.485 3.515 11 O -0.565 6.565 12 C -0.095 4.095 13 C -0.046 4.046 14 C -0.042 4.042 15 Cl -0.056 7.056 16 C -0.075 4.075 17 C -0.072 4.072 18 Cl -0.046 7.046 19 C 0.149 3.851 20 F -0.109 7.109 21 C 0.118 3.882 22 C -0.137 4.137 23 C -0.220 4.220 24 H 0.271 0.729 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 -11.263 3.829 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.161 4.161 3 Si 0.751 3.249 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.437 4.437 8 H 0.116 0.884 9 N -0.115 5.115 10 C 0.272 3.728 11 O -0.449 6.449 12 C -0.100 4.100 13 C -0.066 4.066 14 C -0.069 4.069 15 Cl -0.027 7.027 16 C -0.095 4.095 17 C -0.100 4.100 18 Cl -0.017 7.017 19 C 0.127 3.873 20 F -0.087 7.087 21 C 0.013 3.987 22 C -0.175 4.175 23 C -0.258 4.258 24 H 0.081 0.919 25 H 0.174 0.826 26 H 0.168 0.832 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.411 -11.162 3.451 12.876 hybrid contribution 0.354 0.715 0.174 0.816 sum -5.057 -10.447 3.625 12.160 Atomic orbital electron populations 1.69848 1.05934 1.28283 1.45724 1.25363 0.95474 0.99647 0.95662 0.86019 0.79110 0.80470 0.79324 1.20765 1.19781 1.19564 1.19545 0.92663 0.81803 1.49695 0.88423 1.42964 1.20645 1.06775 1.41070 1.17468 0.87549 0.82939 0.84799 1.90694 1.27528 1.85448 1.41186 1.20358 0.93302 0.95164 1.01218 1.21397 0.92738 0.97142 0.95309 1.20553 0.85614 0.94575 1.06136 1.98377 1.09641 1.98433 1.96265 1.20721 0.90671 0.98879 0.99242 1.20592 0.92547 0.88050 1.08793 1.98378 1.74077 1.37805 1.91462 1.17442 0.78279 0.91987 0.99566 1.91588 1.28050 1.96653 1.92369 1.21289 0.89359 1.02027 0.86016 1.22740 1.02540 0.92058 1.00124 1.23557 1.02044 0.95547 1.04656 0.91861 0.82611 0.83189 0.87271 0.88969 0.89455 0.89269 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.12 10.78 55.50 0.60 -20.52 16 2 C 0.04 1.11 4.87 -17.45 -0.09 1.03 16 3 Si 0.92 19.75 29.56 -169.99 -5.03 14.72 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.16 8.68 -15.00 -0.13 -8.29 16 8 H 0.10 2.72 7.57 -52.49 -0.40 2.32 16 9 N -0.40 -9.66 2.90 -108.88 -0.32 -9.98 16 10 C 0.48 11.75 6.94 -12.44 -0.09 11.66 16 11 O -0.56 -15.80 16.38 5.28 0.09 -15.71 16 12 C -0.10 -1.84 4.57 -104.92 -0.48 -2.32 16 13 C -0.05 -0.75 7.42 -39.13 -0.29 -1.04 16 14 C -0.04 -0.56 6.31 -39.57 -0.25 -0.81 16 15 Cl -0.06 -0.66 28.95 -51.86 -1.50 -2.16 16 16 C -0.08 -0.94 9.60 -39.43 -0.38 -1.32 16 17 C -0.07 -1.04 6.32 -39.49 -0.25 -1.29 16 18 Cl -0.05 -0.60 28.61 -51.86 -1.48 -2.08 16 19 C 0.15 2.68 7.23 -38.92 -0.28 2.40 16 20 F -0.11 -2.17 16.03 2.25 0.04 -2.14 16 21 C 0.12 2.42 2.25 -67.93 -0.15 2.27 16 22 C -0.14 -2.63 8.66 -26.70 -0.23 -2.86 16 23 C -0.22 -3.80 8.60 -26.69 -0.23 -4.03 16 24 H 0.27 6.34 8.32 -40.82 -0.34 6.00 16 25 H 0.16 2.55 6.09 -52.48 -0.32 2.24 16 26 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.11 2.25 6.76 -51.93 -0.35 1.90 16 28 H 0.09 1.92 7.95 -51.93 -0.41 1.51 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 305.16 15.07 4.60 4.60 Total: -1.00 -27.96 305.16 -8.16 -36.12 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.31 Total: 1.75 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.84 Total: -4.61 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.28 Total: -30.50 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -2.98 Total: -4.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.96 -8.16 -36.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.135 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds