Wall clock time and date at job start Tue Mar 31 2020 12:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47145 * 2 1 4 4 C 1.53004 * 109.47000 * 240.00722 * 2 1 3 5 5 C 1.50701 * 109.47208 * 64.99699 * 4 2 1 6 6 H 1.08003 * 119.99774 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00029 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47578 * 90.00043 * 9 7 5 11 11 H 1.48505 * 109.46827 * 209.99864 * 9 7 5 12 12 H 1.48500 * 109.47135 * 329.99536 * 9 7 5 13 13 C 1.52996 * 109.47233 * 120.00643 * 2 1 3 14 14 N 1.46896 * 109.47155 * 295.00056 * 13 2 1 15 15 C 1.46900 * 111.00145 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47030 * 179.97438 * 15 14 13 17 17 C 1.33362 * 122.53459 * 269.97438 * 16 15 14 18 18 S 1.75884 * 109.61129 * 180.02562 * 17 16 15 19 19 C 1.75878 * 90.98063 * 0.02562 * 18 17 16 20 20 Br 1.89098 * 125.21000 * 179.97438 * 19 18 17 21 21 C 1.33484 * 109.58389 * 359.97438 * 19 18 17 22 22 H 1.08998 * 109.47480 * 59.99795 * 1 2 3 23 23 H 1.09005 * 109.47292 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47141 * 299.99347 * 1 2 3 25 25 H 1.09003 * 109.47194 * 185.00050 * 4 2 1 26 26 H 1.09001 * 109.46666 * 304.99584 * 4 2 1 27 27 H 0.97009 * 120.00043 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47140 * 175.00079 * 13 2 1 29 29 H 1.08996 * 109.47000 * 55.00144 * 13 2 1 30 30 H 1.00899 * 111.00305 * 56.04093 * 14 13 2 31 31 H 1.09002 * 109.46972 * 59.99838 * 15 14 13 32 32 H 1.08995 * 109.47342 * 299.99925 * 15 14 13 33 33 H 1.07994 * 125.19780 * 359.97438 * 17 16 15 34 34 H 1.07994 * 122.54898 * 179.72880 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9931 -0.4013 -3.7284 8 7 2.6763 -1.5183 -3.8513 9 14 1.4995 0.5639 -5.2495 10 1 2.5649 1.5436 -5.5816 11 1 1.3129 -0.3698 -6.3892 12 1 0.2281 1.2851 -4.9872 13 6 2.0400 -0.7214 1.2491 14 7 1.6514 0.0371 2.4456 15 6 2.1258 -0.6269 3.6670 16 6 1.7098 0.1788 4.8707 17 6 2.4727 1.1432 5.3868 18 16 1.6636 1.8559 6.7764 19 6 0.2939 0.7715 6.5732 20 35 -1.2451 0.7412 7.6716 21 6 0.5071 -0.0270 5.5250 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.1263 -0.7994 -1.2058 26 1 1.6053 -1.7197 -1.2953 27 1 2.9242 -1.8408 -4.7320 28 1 3.1263 -0.7996 1.2054 29 1 1.6054 -1.7199 1.2949 30 1 0.6529 0.1791 2.4753 31 1 3.2127 -0.7041 3.6398 32 1 1.6922 -1.6249 3.7299 33 1 3.4400 1.4406 5.0097 34 1 -0.2024 -0.7795 5.2140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:30 Heat of formation + Delta-G solvation = 15.466550 kcal Electronic energy + Delta-G solvation = -15799.002288 eV Core-core repulsion = 13096.979394 eV Total energy + Delta-G solvation = -2702.022894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.83035 -36.63011 -33.87261 -32.35918 -31.60662 -28.97603 -27.19353 -26.46897 -24.62357 -22.69528 -22.00280 -19.38093 -18.88396 -17.63727 -16.53238 -15.94806 -14.98084 -14.82366 -14.33271 -13.81563 -13.57276 -13.40530 -13.36503 -12.66780 -12.46950 -12.30169 -11.86933 -11.69717 -11.39246 -11.14014 -11.07443 -10.89067 -10.73094 -10.59095 -10.33269 -10.21022 -9.72752 -9.18145 -8.98264 -8.93425 -8.68662 -8.32801 -8.16913 -5.97563 -3.98621 0.53549 0.81026 1.47944 1.65730 2.31068 3.33430 3.39718 3.42974 4.45371 4.56183 4.79114 4.92920 5.05720 5.35567 5.38391 5.52765 5.56518 5.76209 5.78161 6.01773 6.05087 6.17747 6.24513 6.45540 6.55100 6.92062 7.10749 7.16501 7.31721 7.60049 7.69898 7.85766 8.02719 8.46612 9.07762 9.64840 11.13985 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.002305 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.369173 B =12146.480962 C =12514.665113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.115 3.885 16 C -0.100 4.100 17 C -0.172 4.172 18 S 0.145 5.855 19 C -0.209 4.209 20 Br 0.003 6.997 21 C -0.081 4.081 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.259 0.741 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.340 0.660 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.174 0.826 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 3.788 26.856 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.016 4.016 16 C -0.112 4.112 17 C -0.310 4.310 18 S 0.408 5.592 19 C -0.406 4.406 20 Br 0.086 6.914 21 C -0.115 4.115 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.159 0.841 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.191 0.809 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.529 5.250 28.144 28.985 hybrid contribution -0.853 -1.411 -2.120 2.686 sum -5.382 3.839 26.023 26.850 Atomic orbital electron populations 1.21744 0.96680 1.00441 1.00310 1.21223 0.94882 1.00111 0.94079 0.91619 1.19111 0.96124 0.95367 0.90341 1.21241 1.34642 1.08251 0.90990 0.92561 1.25019 0.95350 0.95081 0.99110 1.69965 1.39117 1.21233 1.23385 0.86628 0.78939 0.79811 0.82826 1.20719 1.21330 1.19901 1.22170 1.00448 0.94482 0.89355 1.60628 1.19910 1.50341 1.00859 1.20598 1.00910 0.93565 0.86525 1.18825 0.94092 0.99276 0.99038 1.25737 1.04975 1.00644 0.99652 1.84315 1.09115 1.36294 1.29487 1.25964 1.00841 1.08493 1.05259 1.96707 1.31667 1.98393 1.64585 1.20160 0.97779 0.99649 0.93893 0.91839 0.94014 0.94973 0.96661 0.96742 0.93099 0.91330 0.95678 0.84129 0.89963 0.94301 0.80907 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.16 16 2 C -0.08 -1.69 2.54 -90.62 -0.23 -1.92 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.07 5.14 -3.83 -0.02 1.05 16 14 N -0.69 -9.67 6.49 -115.06 -0.75 -10.42 16 15 C 0.12 1.34 5.94 -4.98 -0.03 1.31 16 16 C -0.10 -1.07 5.31 -106.25 -0.56 -1.63 16 17 C -0.17 -1.70 10.97 29.03 0.32 -1.38 16 18 S 0.14 1.34 23.34 -107.50 -2.51 -1.17 16 19 C -0.21 -2.12 6.97 29.07 0.20 -1.92 16 20 Br 0.00 0.03 34.07 -68.01 -2.32 -2.29 16 21 C -0.08 -0.83 9.91 -41.17 -0.41 -1.24 16 22 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.34 4.69 6.98 -39.29 -0.27 4.41 16 31 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -29.25 319.10 -10.68 -39.93 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.71 Total: -0.90 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -0.92 Total: -20.43 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.01 Total: -36.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.25 -10.68 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.395 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds