Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 C 1.52993 * 109.46973 * 119.99863 * 2 1 3 5 5 C 1.50698 * 109.47381 * 294.99851 * 4 2 1 6 6 H 1.08006 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31503 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47029 * 60.00397 * 9 7 5 11 11 H 1.48496 * 109.46914 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47237 * 300.00150 * 9 7 5 13 13 C 1.53001 * 109.47150 * 239.99940 * 2 1 3 14 14 N 1.46903 * 109.47012 * 64.99704 * 13 2 1 15 15 C 1.46899 * 111.00000 * 179.97438 * 14 13 2 16 16 C 1.50700 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.33399 * 125.19268 * 90.03099 * 16 15 14 18 18 C 1.38470 * 114.90859 * 179.77238 * 17 16 15 19 19 Br 1.89098 * 122.54493 * 180.24710 * 18 17 16 20 20 C 1.33430 * 114.90709 * 0.42675 * 18 17 16 21 21 S 1.75877 * 125.19613 * 270.02474 * 16 15 14 22 22 H 1.08997 * 109.47431 * 300.00142 * 1 2 3 23 23 H 1.09004 * 109.46935 * 60.00463 * 1 2 3 24 24 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47326 * 55.00242 * 4 2 1 26 26 H 1.09001 * 109.47144 * 174.99747 * 4 2 1 27 27 H 0.97003 * 120.00459 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47227 * 305.00364 * 13 2 1 29 29 H 1.08994 * 109.46903 * 185.00047 * 13 2 1 30 30 H 1.00897 * 110.99947 * 56.05140 * 14 13 2 31 31 H 1.09002 * 109.46774 * 60.00083 * 15 14 13 32 32 H 1.09000 * 109.47440 * 300.00745 * 15 14 13 33 33 H 1.07995 * 122.54360 * 359.97438 * 17 16 15 34 34 H 1.08002 * 125.20586 * 179.86604 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9743 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0176 0.6687 5.3086 11 1 1.9927 -0.1377 6.4621 12 1 2.0896 1.9226 5.1876 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6672 16 6 1.7097 0.1792 -4.8708 17 6 2.4292 1.1536 -5.4299 18 6 1.8440 1.7509 -6.5335 19 35 2.6778 3.1495 -7.4950 20 6 0.6454 1.2673 -6.8648 21 16 0.2016 -0.0215 -5.7531 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2056 27 1 2.9228 -1.8422 4.7318 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2055 30 1 1.9882 0.9872 -2.3967 31 1 1.6921 -1.6246 -3.7300 32 1 3.2127 -0.7038 -3.6401 33 1 3.3962 1.4515 -5.0524 34 1 0.0420 1.6112 -7.6919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602516384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = 15.191804 kcal Electronic energy + Delta-G solvation = -15759.535662 eV Core-core repulsion = 13057.500855 eV Total energy + Delta-G solvation = -2702.034807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -38.49738 -36.82472 -34.25368 -32.26113 -31.22111 -29.57019 -26.99154 -26.24229 -24.51992 -22.67360 -22.05492 -19.43189 -19.22114 -17.48718 -16.32991 -15.76062 -15.35143 -14.83710 -14.36451 -14.08225 -13.56772 -13.46333 -13.23126 -12.70550 -12.43729 -12.09477 -11.83532 -11.54882 -11.36366 -11.11765 -10.92737 -10.84529 -10.76492 -10.49671 -10.30160 -10.27821 -9.71841 -9.24506 -9.03403 -8.92674 -8.62147 -8.33092 -8.23397 -5.97982 -3.99213 0.58810 0.90206 1.48572 2.06545 2.18374 3.34538 3.38867 3.41467 4.32811 4.48416 4.61507 4.82362 5.06195 5.16436 5.37838 5.45757 5.61251 5.65998 5.79951 5.83076 5.97793 6.12246 6.36939 6.50924 6.66157 6.96434 7.14614 7.16999 7.26934 7.53281 7.68243 7.83835 8.01908 8.45858 9.06906 9.64243 11.13536 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002363 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.220105 B =11848.518237 C =12337.256922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.124 3.876 16 C -0.154 4.154 17 C -0.127 4.127 18 C -0.096 4.096 19 Br -0.036 7.036 20 C -0.197 4.197 21 S 0.169 5.831 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.341 0.659 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.146 0.854 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 5.791 -26.542 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.006 4.006 16 C -0.273 4.273 17 C -0.158 4.158 18 C -0.189 4.189 19 Br 0.047 6.953 20 C -0.336 4.336 21 S 0.432 5.568 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.159 0.841 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.932 4.925 -26.638 27.247 hybrid contribution 1.771 1.341 0.978 2.427 sum -1.161 6.266 -25.660 26.439 Atomic orbital electron populations 1.21593 0.95661 1.00586 1.00200 1.21205 0.96063 0.98959 0.93882 0.92762 1.19113 0.95904 0.95572 0.90375 1.21200 1.34705 1.08317 0.90989 0.92606 1.25015 0.95316 0.95085 0.99093 1.69948 1.39034 1.21221 1.23506 0.86688 0.78925 0.80106 0.82470 1.20249 1.21371 1.20303 1.22199 0.97415 0.97756 0.89121 1.60617 1.63970 1.06019 1.00787 1.20411 0.97994 0.96392 0.85837 1.24513 0.97961 1.02522 1.02312 1.19896 1.02359 0.97441 0.96094 1.20630 0.97222 1.00633 1.00427 1.96702 1.80270 1.45227 1.73107 1.25742 0.99438 1.02884 1.05545 1.84481 1.18702 1.32582 1.21008 0.92736 0.93942 0.94147 0.96537 0.96922 0.93028 0.91329 0.95445 0.84077 0.89765 0.93130 0.83615 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.64 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.04 5.07 -3.82 -0.02 1.02 16 14 N -0.68 -9.37 5.95 -115.06 -0.68 -10.05 16 15 C 0.12 1.42 6.18 -4.98 -0.03 1.38 16 16 C -0.15 -1.65 6.02 -36.00 -0.22 -1.87 16 17 C -0.13 -1.32 9.91 -41.19 -0.41 -1.73 16 18 C -0.10 -0.97 6.17 -41.18 -0.25 -1.22 16 19 Br -0.04 -0.34 33.87 -68.01 -2.30 -2.64 16 20 C -0.20 -1.80 11.05 29.05 0.32 -1.48 16 21 S 0.17 1.62 23.33 -107.50 -2.51 -0.89 16 22 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 23 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.34 4.57 8.72 -39.29 -0.34 4.23 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -29.20 321.40 -10.79 -39.99 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.84 Total: -1.39 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.01 Total: -20.32 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.05 Total: -36.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.30 Total: -2.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.20 -10.79 -39.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602516384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.178 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds