Wall clock time and date at job start Tue Mar 31 2020 12:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 C 1.52993 * 109.46973 * 119.99863 * 2 1 3 5 5 C 1.50698 * 109.47381 * 294.99851 * 4 2 1 6 6 H 1.08006 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31503 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47029 * 60.00397 * 9 7 5 11 11 H 1.48496 * 109.46914 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47237 * 300.00150 * 9 7 5 13 13 C 1.53001 * 109.47150 * 239.99940 * 2 1 3 14 14 N 1.46903 * 109.47012 * 64.99704 * 13 2 1 15 15 C 1.46899 * 111.00000 * 179.97438 * 14 13 2 16 16 C 1.50700 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.33399 * 125.19268 * 90.03099 * 16 15 14 18 18 C 1.38470 * 114.90859 * 179.77238 * 17 16 15 19 19 Br 1.89098 * 122.54493 * 180.24710 * 18 17 16 20 20 C 1.33430 * 114.90709 * 0.42675 * 18 17 16 21 21 S 1.75877 * 125.19613 * 270.02474 * 16 15 14 22 22 H 1.08997 * 109.47431 * 300.00142 * 1 2 3 23 23 H 1.09004 * 109.46935 * 60.00463 * 1 2 3 24 24 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47326 * 55.00242 * 4 2 1 26 26 H 1.09001 * 109.47144 * 174.99747 * 4 2 1 27 27 H 0.97003 * 120.00459 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47227 * 305.00364 * 13 2 1 29 29 H 1.08994 * 109.46903 * 185.00047 * 13 2 1 30 30 H 1.00897 * 110.99947 * 56.05140 * 14 13 2 31 31 H 1.09002 * 109.46774 * 60.00083 * 15 14 13 32 32 H 1.09000 * 109.47440 * 300.00745 * 15 14 13 33 33 H 1.07995 * 122.54360 * 359.97438 * 17 16 15 34 34 H 1.08002 * 125.20586 * 179.86604 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9743 2.3756 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4976 0.5623 5.2497 10 1 0.0176 0.6687 5.3086 11 1 1.9927 -0.1377 6.4621 12 1 2.0896 1.9226 5.1876 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6672 16 6 1.7097 0.1792 -4.8708 17 6 2.4292 1.1536 -5.4299 18 6 1.8440 1.7509 -6.5335 19 35 2.6778 3.1495 -7.4950 20 6 0.6454 1.2673 -6.8648 21 16 0.2016 -0.0215 -5.7531 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 1.2951 26 1 3.1263 -0.7995 1.2056 27 1 2.9228 -1.8422 4.7318 28 1 1.6054 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2055 30 1 1.9882 0.9872 -2.3967 31 1 1.6921 -1.6246 -3.7300 32 1 3.2127 -0.7038 -3.6401 33 1 3.3962 1.4515 -5.0524 34 1 0.0420 1.6112 -7.6919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602516384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:16 Heat of formation + Delta-G solvation = -0.975871 kcal Electronic energy + Delta-G solvation = -15760.236745 eV Core-core repulsion = 13057.500855 eV Total energy + Delta-G solvation = -2702.735890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33678 -38.15185 -35.77666 -34.07949 -32.18156 -30.51586 -28.81103 -27.42059 -25.95934 -24.16018 -23.13962 -20.84865 -20.17521 -18.53516 -18.26660 -16.63729 -16.56101 -16.43364 -15.78453 -15.49204 -14.76499 -14.41588 -14.20409 -14.07792 -13.90063 -13.37561 -13.30847 -12.94917 -12.79063 -12.72709 -12.49385 -12.19975 -12.00914 -11.83502 -11.66864 -11.47456 -11.22616 -11.08285 -10.93429 -10.51845 -9.82122 -9.36476 -9.34536 -8.16581 -6.25455 -0.17003 0.17339 0.72166 1.33059 1.40421 1.41133 1.43398 1.51057 2.42885 3.16977 3.29166 3.74772 4.06725 4.15661 4.24318 4.33698 4.42624 4.55542 4.61160 4.86920 4.90618 4.93554 5.01835 5.05222 5.17814 5.30031 5.47705 5.52887 5.56774 5.82502 5.90427 5.98678 6.32236 6.41683 6.90593 7.42784 8.95228 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027119 B = 0.002363 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.220105 B =11848.518237 C =12337.256922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.078 3.922 14 N -0.681 5.681 15 C 0.128 3.872 16 C -0.170 4.170 17 C -0.126 4.126 18 C -0.114 4.114 19 Br -0.032 7.032 20 C -0.188 4.188 21 S 0.178 5.822 22 H 0.036 0.964 23 H 0.065 0.935 24 H 0.036 0.964 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.345 0.655 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.149 0.851 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 6.879 -27.527 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.313 5.313 15 C -0.003 4.003 16 C -0.289 4.289 17 C -0.158 4.158 18 C -0.206 4.206 19 Br 0.051 6.949 20 C -0.327 4.327 21 S 0.442 5.558 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.009 0.991 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.755 6.024 -27.643 28.540 hybrid contribution 2.027 1.002 1.203 2.561 sum -1.728 7.026 -26.440 27.412 Atomic orbital electron populations 1.21487 0.94759 1.00398 1.00407 1.21011 0.96661 0.98446 0.93191 0.92850 1.19005 0.94157 0.94701 0.92618 1.21628 1.34436 1.08609 0.92151 0.92168 1.25928 0.95286 0.96079 1.02590 1.70083 1.40289 1.22914 1.24327 0.85590 0.78933 0.78810 0.78278 1.19273 1.21050 1.19281 1.21871 0.96990 0.97403 0.88877 1.60526 1.64130 1.06036 1.00562 1.20381 0.98474 0.96432 0.84973 1.24412 0.98887 1.03065 1.02551 1.20014 1.02497 0.97163 0.96098 1.20728 0.97801 1.01305 1.00800 1.96704 1.80280 1.44972 1.72910 1.26038 0.99153 1.01972 1.05527 1.84454 1.17916 1.32605 1.20803 0.94530 0.91560 0.94520 0.99068 0.99454 0.92945 0.91514 0.95765 0.83710 0.89449 0.92427 0.83288 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 2 C -0.07 -2.95 2.48 -10.79 -0.03 -2.98 16 3 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.86 8.41 25.60 0.22 -29.65 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 9 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.08 2.50 5.07 86.30 0.44 2.94 16 14 N -0.68 -17.67 5.95 -517.93 -3.08 -20.75 16 15 C 0.13 2.71 6.18 85.56 0.53 3.24 16 16 C -0.17 -3.35 6.02 24.59 0.15 -3.21 16 17 C -0.13 -2.43 9.91 21.23 0.21 -2.22 16 18 C -0.11 -2.08 6.17 21.24 0.13 -1.95 16 19 Br -0.03 -0.54 33.87 -20.37 -0.69 -1.23 16 20 C -0.19 -3.00 11.05 66.73 0.74 -2.27 16 21 S 0.18 3.07 23.33 -56.49 -1.32 1.75 16 22 H 0.04 1.47 6.95 -2.39 -0.02 1.46 16 23 H 0.07 2.16 7.75 -2.39 -0.02 2.14 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.34 8.67 8.72 -89.70 -0.78 7.88 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -62.03 321.40 1.15 -60.88 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.31 Total: 7.18 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.62 Total: -37.50 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -2.79 Total: -77.54 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.75 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.69 Total: -1.23 kcal Total: -62.03 1.15 -60.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602516384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.906 kcal (2) G-P(sol) polarization free energy of solvation -62.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds