Wall clock time and date at job start Tue Mar 31 2020 12:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46784 * 59.99793 * 9 7 5 11 11 H 1.48494 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47106 * 300.00138 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.50693 * 109.47318 * 180.02562 * 15 14 13 17 17 S 1.75884 * 125.20100 * 270.02450 * 16 15 14 18 18 C 1.75885 * 90.97884 * 179.97438 * 17 16 15 19 19 C 1.33391 * 109.60667 * 0.02562 * 18 17 16 20 20 C 1.33433 * 125.20612 * 89.71587 * 16 15 14 21 21 Br 1.89105 * 122.54455 * 0.03802 * 20 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 27 27 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 29 29 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 30 30 H 1.00899 * 110.99514 * 303.95543 * 14 13 2 31 31 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 32 32 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 33 33 H 1.08003 * 125.19154 * 180.02562 * 18 17 16 34 34 H 1.07999 * 122.54656 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.0187 0.6705 5.3089 11 1 1.9925 -0.1377 6.4622 12 1 2.0917 1.9230 5.1872 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7090 0.1786 -4.8708 17 16 0.2003 -0.0211 -5.7526 18 6 0.6444 1.2676 -6.8642 19 6 1.8411 1.7536 -6.5309 20 6 2.4263 1.1566 -5.4271 21 35 4.1167 1.6827 -4.7625 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6054 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2057 27 1 2.9213 -1.8429 4.7319 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 0.6529 0.1793 -2.4753 31 1 3.2118 -0.7051 -3.6405 32 1 1.6905 -1.6250 -3.7296 33 1 0.0404 1.6126 -7.6904 34 1 2.3152 2.5555 -7.0773 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602544311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:26 Heat of formation + Delta-G solvation = 18.175589 kcal Electronic energy + Delta-G solvation = -16009.541289 eV Core-core repulsion = 13307.635868 eV Total energy + Delta-G solvation = -2701.905421 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.47663 -36.85830 -34.15461 -32.17157 -31.20692 -29.62290 -26.91184 -26.00472 -24.51933 -22.97269 -22.02845 -19.40763 -18.96108 -17.45261 -16.42949 -15.92410 -15.23351 -14.87717 -14.36043 -13.92717 -13.71535 -13.32322 -12.94458 -12.73247 -12.41506 -12.26615 -11.82914 -11.67344 -11.32827 -11.07264 -10.86542 -10.80388 -10.72766 -10.33816 -10.22072 -10.19339 -9.70767 -9.20428 -9.00779 -8.90806 -8.59082 -8.30814 -8.18900 -5.95686 -3.96799 0.60630 0.97413 1.51328 2.13388 2.23865 3.36106 3.40370 3.43037 4.34783 4.50063 4.64118 4.79306 5.02234 5.31771 5.40086 5.55074 5.58907 5.75279 5.79336 5.81785 5.97966 6.06057 6.24466 6.45782 6.56489 6.91275 7.11480 7.17976 7.29390 7.56762 7.71683 7.87620 8.04510 8.48294 9.09318 9.66493 11.15826 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.003188 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.310874 B = 8780.780189 C = 9561.384711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.678 5.678 15 C 0.120 3.880 16 C -0.137 4.137 17 S 0.131 5.869 18 C -0.212 4.212 19 C -0.115 4.115 20 C -0.095 4.095 21 Br -0.020 7.020 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.339 0.661 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.170 0.830 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 4.258 -24.753 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.310 5.310 15 C -0.011 4.011 16 C -0.258 4.258 17 S 0.394 5.606 18 C -0.348 4.348 19 C -0.146 4.146 20 C -0.188 4.188 21 Br 0.064 6.936 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.188 0.812 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.529 3.803 -24.206 24.550 hybrid contribution -0.070 0.576 0.477 0.752 sum -1.599 4.379 -23.728 24.182 Atomic orbital electron populations 1.21747 0.96710 1.00413 1.00299 1.21217 0.94829 1.00215 0.93961 0.91488 1.19104 0.96167 0.95329 0.90290 1.21200 1.34698 1.08252 0.90987 0.92614 1.25014 0.95333 0.95088 0.99072 1.69954 1.39088 1.21204 1.23466 0.86694 0.78848 0.80176 0.82497 1.20321 1.21391 1.20257 1.22179 1.00660 0.94356 0.89095 1.60613 1.19690 1.50274 1.00421 1.20538 1.01864 0.93040 0.85658 1.24567 0.97692 1.01557 1.01978 1.84418 1.17955 1.34996 1.23236 1.25554 1.00851 1.02917 1.05469 1.19980 0.95466 1.02120 0.97078 1.20708 0.96704 1.01064 1.00288 1.96732 1.19141 1.90700 1.87044 0.94025 0.95011 0.91817 0.96760 0.96613 0.93054 0.91116 0.95654 0.84228 0.88498 0.93965 0.81230 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.70 2.54 -90.63 -0.23 -1.93 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.12 5.14 -3.82 -0.02 1.10 16 14 N -0.68 -9.96 6.49 -115.06 -0.75 -10.71 16 15 C 0.12 1.51 5.82 -4.98 -0.03 1.49 16 16 C -0.14 -1.60 6.02 -35.99 -0.22 -1.82 16 17 S 0.13 1.24 23.33 -107.50 -2.51 -1.26 16 18 C -0.21 -1.78 11.23 29.04 0.33 -1.45 16 19 C -0.12 -1.11 10.04 -41.19 -0.41 -1.53 16 20 C -0.09 -1.10 6.17 -41.18 -0.25 -1.36 16 21 Br -0.02 -0.24 32.71 -68.01 -2.22 -2.47 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 24 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.34 4.79 6.97 -39.29 -0.27 4.52 16 31 H 0.10 1.26 7.32 -51.93 -0.38 0.88 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -29.72 317.12 -10.68 -40.40 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.67 Total: -0.95 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.02 Total: -20.24 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.01 Total: -37.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.26 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.22 Total: -2.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.72 -10.68 -40.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602544311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.573 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds