Wall clock time and date at job start Tue Mar 31 2020 12:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46784 * 59.99793 * 9 7 5 11 11 H 1.48494 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47106 * 300.00138 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.50693 * 109.47318 * 180.02562 * 15 14 13 17 17 S 1.75884 * 125.20100 * 270.02450 * 16 15 14 18 18 C 1.75885 * 90.97884 * 179.97438 * 17 16 15 19 19 C 1.33391 * 109.60667 * 0.02562 * 18 17 16 20 20 C 1.33433 * 125.20612 * 89.71587 * 16 15 14 21 21 Br 1.89105 * 122.54455 * 0.03802 * 20 16 15 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 27 27 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 29 29 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 30 30 H 1.00899 * 110.99514 * 303.95543 * 14 13 2 31 31 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 32 32 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 33 33 H 1.08003 * 125.19154 * 180.02562 * 18 17 16 34 34 H 1.07999 * 122.54656 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.0187 0.6705 5.3089 11 1 1.9925 -0.1377 6.4622 12 1 2.0917 1.9230 5.1872 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7090 0.1786 -4.8708 17 16 0.2003 -0.0211 -5.7526 18 6 0.6444 1.2676 -6.8642 19 6 1.8411 1.7536 -6.5309 20 6 2.4263 1.1566 -5.4271 21 35 4.1167 1.6827 -4.7625 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6054 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2057 27 1 2.9213 -1.8429 4.7319 28 1 3.1263 -0.7994 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 0.6529 0.1793 -2.4753 31 1 3.2118 -0.7051 -3.6405 32 1 1.6905 -1.6250 -3.7296 33 1 0.0404 1.6126 -7.6904 34 1 2.3152 2.5555 -7.0773 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602544311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:25 Heat of formation + Delta-G solvation = 1.038265 kcal Electronic energy + Delta-G solvation = -16010.284419 eV Core-core repulsion = 13307.635868 eV Total energy + Delta-G solvation = -2702.648551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.35513 -38.21717 -35.73605 -34.03151 -32.14515 -30.73517 -28.77841 -27.24586 -25.86484 -24.22502 -23.40826 -20.75802 -20.07242 -18.56902 -18.20718 -17.01902 -16.61957 -16.21314 -15.87865 -15.22877 -14.96135 -14.41974 -14.22531 -13.89766 -13.79000 -13.59436 -13.32537 -13.11485 -12.76781 -12.69352 -12.51718 -12.21820 -11.93812 -11.83570 -11.65680 -11.48376 -11.11491 -11.05479 -10.96676 -10.51448 -9.78356 -9.36674 -9.35608 -8.16069 -6.24996 -0.17576 0.16794 0.80907 1.30571 1.40911 1.43620 1.47503 1.51227 2.43181 3.17389 3.26835 3.67704 4.00873 4.20428 4.25188 4.29995 4.47101 4.55391 4.63244 4.76764 4.85270 4.88031 5.04723 5.07580 5.22143 5.24887 5.38946 5.49904 5.56409 5.80464 5.90585 5.99473 6.32273 6.41185 6.90813 7.43112 8.95796 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.003188 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.310874 B = 8780.780189 C = 9561.384711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.079 3.921 14 N -0.678 5.678 15 C 0.123 3.877 16 C -0.164 4.164 17 S 0.153 5.847 18 C -0.194 4.194 19 C -0.133 4.133 20 C -0.100 4.100 21 Br -0.035 7.035 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.045 0.955 25 H -0.009 1.009 26 H -0.014 1.014 27 H 0.262 0.738 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.344 0.656 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 5.317 -26.124 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.050 4.050 14 N -0.311 5.311 15 C -0.007 4.007 16 C -0.285 4.285 17 S 0.416 5.584 18 C -0.331 4.331 19 C -0.163 4.163 20 C -0.194 4.194 21 Br 0.049 6.951 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.010 0.990 26 H 0.005 0.995 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.164 0.836 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.219 0.781 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.163 4.870 -25.597 26.247 hybrid contribution 0.416 0.233 0.808 0.939 sum -2.747 5.104 -24.788 25.457 Atomic orbital electron populations 1.21648 0.94951 1.00746 1.01018 1.20997 0.96210 0.98968 0.93141 0.92659 1.18992 0.94226 0.94609 0.92561 1.21615 1.34485 1.08539 0.92102 0.92154 1.25934 0.95275 0.96085 1.02594 1.70092 1.40321 1.22914 1.24304 0.85584 0.78975 0.78761 0.78243 1.19130 1.21042 1.19398 1.21849 0.99877 0.94285 0.88942 1.60494 1.20085 1.50197 1.00337 1.20452 1.01460 0.93620 0.85189 1.24486 0.99393 1.02209 1.02388 1.84351 1.16142 1.35118 1.22782 1.25979 1.00354 1.01419 1.05325 1.20145 0.96151 1.03009 0.96995 1.20931 0.96187 1.01276 1.00965 1.96716 1.20331 1.90779 1.87313 0.93865 0.91680 0.93631 0.99020 0.99523 0.92960 0.92190 0.95281 0.83624 0.89341 0.92988 0.78077 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.77 71.98 0.63 -3.93 16 2 C -0.07 -3.04 2.54 -10.80 -0.03 -3.07 16 3 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.14 8.41 25.60 0.22 -29.92 16 6 H 0.06 3.30 7.06 -2.92 -0.02 3.28 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.08 2.71 5.14 86.30 0.44 3.15 16 14 N -0.68 -19.25 6.49 -517.93 -3.36 -22.61 16 15 C 0.12 3.00 5.82 85.56 0.50 3.50 16 16 C -0.16 -3.58 6.02 24.60 0.15 -3.43 16 17 S 0.15 2.50 23.33 -56.49 -1.32 1.18 16 18 C -0.19 -2.63 11.23 66.72 0.75 -1.88 16 19 C -0.13 -2.25 10.04 21.23 0.21 -2.03 16 20 C -0.10 -2.18 6.17 21.24 0.13 -2.05 16 21 Br -0.04 -0.84 32.71 -20.37 -0.67 -1.50 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.91 6.68 -2.39 -0.02 1.89 16 24 H 0.04 1.80 6.95 -2.38 -0.02 1.78 16 25 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.34 9.07 6.97 -89.69 -0.63 8.44 16 31 H 0.09 2.28 7.32 -2.38 -0.02 2.27 16 32 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -64.39 317.12 1.03 -63.36 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.47 Total: 7.43 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 3.60 Total: -37.39 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.08 Total: -79.90 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.32 Total: 1.18 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.67 Total: -1.50 kcal Total: -64.39 1.03 -63.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602544311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.393 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds