Wall clock time and date at job start Tue Mar 31 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47022 * 2 1 4 4 C 1.53005 * 109.47017 * 240.00524 * 2 1 3 5 5 C 1.50698 * 109.47190 * 65.15267 * 4 2 1 6 6 H 1.07996 * 120.00367 * 2.22415 * 5 4 2 7 7 C 1.37878 * 119.99796 * 182.23137 * 5 4 2 8 8 N 1.31516 * 119.99782 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00098 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47217 * 90.00435 * 9 7 5 11 11 H 1.48500 * 109.47197 * 210.00565 * 9 7 5 12 12 H 1.48499 * 109.47137 * 330.00068 * 9 7 5 13 13 N 1.46904 * 109.47342 * 120.00471 * 2 1 3 14 14 C 1.46895 * 110.99819 * 177.90803 * 13 2 1 15 15 C 1.46902 * 110.99553 * 301.85936 * 13 2 1 16 16 C 1.50696 * 109.46827 * 172.95088 * 15 13 2 17 17 C 1.33400 * 122.54501 * 265.81148 * 16 15 13 18 18 S 1.75879 * 109.60634 * 180.02562 * 17 16 15 19 19 C 1.75880 * 90.97874 * 0.02562 * 18 17 16 20 20 C 1.33429 * 109.59594 * 359.73106 * 19 18 17 21 21 Br 1.89111 * 122.54897 * 180.24118 * 20 19 18 22 22 H 1.09006 * 109.47542 * 59.99760 * 1 2 3 23 23 H 1.09003 * 109.46956 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47522 * 299.99454 * 1 2 3 25 25 H 1.09006 * 109.46957 * 185.15007 * 4 2 1 26 26 H 1.08995 * 109.47147 * 305.14607 * 4 2 1 27 27 H 0.97003 * 119.99600 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.47589 * 61.77586 * 14 13 2 29 29 H 1.09003 * 109.46973 * 181.77485 * 14 13 2 30 30 H 1.09004 * 109.47287 * 301.77282 * 14 13 2 31 31 H 1.08996 * 109.47387 * 292.95048 * 15 13 2 32 32 H 1.09004 * 109.47152 * 52.95455 * 15 13 2 33 33 H 1.07994 * 125.19336 * 0.02599 * 17 16 15 34 34 H 1.08002 * 125.20200 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6445 0.0592 -2.4764 6 1 1.1167 0.9958 -2.3739 7 6 1.9564 -0.4228 -3.7300 8 7 1.6108 0.2580 -4.8009 9 14 2.8696 -2.0426 -3.9074 10 1 1.8907 -3.1557 -3.9953 11 1 3.6967 -2.0121 -5.1404 12 1 3.7477 -2.2475 -2.7274 13 7 2.0197 -0.6926 1.1994 14 6 3.4872 -0.7557 1.2085 15 6 1.5126 -0.0527 2.4206 16 6 1.8899 -0.8861 3.6181 17 6 1.0736 -1.8028 4.1404 18 16 1.8513 -2.5682 5.5198 19 6 3.2836 -1.5705 5.3042 20 6 3.1119 -0.7614 4.2572 21 35 4.4346 0.4666 3.6927 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 3.1261 -0.8017 -1.2044 26 1 1.6033 -1.7187 -1.2967 27 1 1.8306 -0.0809 -5.6828 28 1 3.8943 0.2553 1.2298 29 1 3.8220 -1.3008 2.0910 30 1 3.8345 -1.2683 0.3114 31 1 1.9488 0.9415 2.5179 32 1 0.4273 0.0307 2.3634 33 1 0.0861 -2.0389 3.7724 34 1 4.1688 -1.6103 5.9218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709981345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:18 Heat of formation + Delta-G solvation = 48.633291 kcal Electronic energy + Delta-G solvation = -16868.971328 eV Core-core repulsion = 14168.386652 eV Total energy + Delta-G solvation = -2700.584676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.19859 -36.92100 -33.08337 -31.68276 -31.17737 -29.42109 -28.16404 -26.42143 -24.44297 -23.15714 -21.73013 -18.99086 -18.65967 -17.83746 -16.99238 -15.69529 -15.13415 -14.72628 -14.18644 -13.90206 -13.52994 -13.23486 -13.04182 -12.67332 -12.54356 -12.28592 -11.76496 -11.65502 -11.50960 -11.11258 -11.02838 -10.85145 -10.69726 -10.48817 -10.13651 -9.80806 -9.74185 -9.56239 -9.09996 -8.88946 -8.52729 -8.48972 -7.70984 -6.01675 -3.98680 0.70169 0.98351 1.58093 2.14805 2.28350 3.34233 3.41405 3.46562 4.48625 4.51048 4.66444 4.96816 5.20878 5.32553 5.36461 5.59181 5.67139 5.77121 5.89247 6.01739 6.07471 6.18845 6.27182 6.28104 6.46966 6.64893 6.79533 7.04457 7.18808 7.38125 7.62077 7.68328 7.90495 8.56436 9.02741 9.61325 11.11558 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.004346 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.811711 B = 6441.005423 C = 6973.148785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.094 3.906 3 H 0.035 0.965 4 C -0.004 4.004 5 C -0.515 4.515 6 H 0.073 0.927 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.532 5.532 14 C 0.015 3.985 15 C 0.101 3.899 16 C -0.074 4.074 17 C -0.186 4.186 18 S 0.123 5.877 19 C -0.190 4.190 20 C -0.093 4.093 21 Br -0.024 7.024 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -2.813 23.749 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.042 4.042 5 C -0.553 4.553 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.256 5.256 14 C -0.133 4.133 15 C -0.030 4.030 16 C -0.086 4.086 17 C -0.323 4.323 18 S 0.386 5.614 19 C -0.328 4.328 20 C -0.185 4.185 21 Br 0.060 6.940 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.191 0.809 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.083 -3.982 24.361 24.876 hybrid contribution 0.976 0.723 -1.087 1.629 sum 4.058 -3.260 23.274 23.849 Atomic orbital electron populations 1.21811 0.95015 1.01647 1.00651 1.21640 0.95148 0.95449 0.89050 0.94725 1.19664 0.96144 0.96266 0.92113 1.21088 1.37273 1.07950 0.89025 0.90938 1.24973 0.95421 0.97053 0.95864 1.69914 1.47555 1.38965 0.97935 0.86802 0.80486 0.84592 0.77563 1.20299 1.21558 1.19027 1.62191 1.09273 1.53081 1.01079 1.22845 0.87917 1.00295 1.02235 1.20915 1.01257 0.93869 0.86909 1.18680 0.92070 0.99344 0.98542 1.25448 1.04940 1.01410 1.00489 1.84259 1.07865 1.39183 1.30087 1.25603 1.03630 1.01300 1.02247 1.20799 0.96178 1.01556 1.00011 1.96704 1.49984 1.57036 1.90262 0.90944 0.92717 0.94679 0.96384 0.96218 0.92806 0.95081 0.92274 0.90973 0.93630 0.89179 0.80937 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.73 37.15 0.32 -2.15 16 2 C 0.09 1.90 2.09 -67.71 -0.14 1.75 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.00 -0.10 3.37 -27.88 -0.09 -0.20 16 5 C -0.51 -14.48 8.92 -34.44 -0.31 -14.79 16 6 H 0.07 2.18 7.40 -52.49 -0.39 1.79 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 9 Si 0.88 22.02 27.42 -169.99 -4.66 17.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.46 6.61 56.52 0.37 -6.08 16 13 N -0.53 -9.32 4.65 -236.33 -1.10 -10.42 16 14 C 0.02 0.26 7.47 60.06 0.45 0.71 16 15 C 0.10 1.47 4.73 -4.98 -0.02 1.45 16 16 C -0.07 -0.96 4.80 -106.23 -0.51 -1.47 16 17 C -0.19 -2.08 10.96 29.04 0.32 -1.76 16 18 S 0.12 1.14 23.34 -107.50 -2.51 -1.36 16 19 C -0.19 -1.93 11.05 29.05 0.32 -1.61 16 20 C -0.09 -1.13 4.99 -41.18 -0.21 -1.34 16 21 Br -0.02 -0.29 28.58 -68.01 -1.94 -2.23 16 22 H 0.07 1.47 7.01 -51.93 -0.36 1.11 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.54 6.22 -51.93 -0.32 0.22 16 25 H 0.02 0.44 5.27 -51.93 -0.27 0.17 16 26 H 0.02 0.48 7.45 -51.93 -0.39 0.10 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.52 6.78 -51.93 -0.35 0.17 16 29 H 0.06 0.93 5.02 -51.93 -0.26 0.67 16 30 H 0.07 1.35 6.06 -51.93 -0.31 1.04 16 31 H 0.05 0.68 7.34 -51.93 -0.38 0.30 16 32 H 0.09 1.24 5.86 -51.93 -0.30 0.93 16 33 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -30.16 296.47 -9.14 -39.30 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.20 Total: -2.50 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 0.03 Total: -17.52 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.32 Total: -37.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.66 Total: 17.36 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.36 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -1.94 Total: -2.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.16 -9.14 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.931 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds