Wall clock time and date at job start Tue Mar 31 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47095 * 2 1 4 4 C 1.52999 * 109.47253 * 120.00559 * 2 1 3 5 5 C 1.50705 * 109.46898 * 184.99596 * 4 2 1 6 6 H 1.07994 * 119.99680 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99719 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99677 * 179.72679 * 7 5 4 9 9 Si 1.86793 * 119.99944 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47650 * 269.72527 * 9 7 5 11 11 H 1.48499 * 109.47476 * 29.73317 * 9 7 5 12 12 H 1.48508 * 109.46866 * 149.72579 * 9 7 5 13 13 N 1.46905 * 109.46412 * 240.00162 * 2 1 3 14 14 C 1.46892 * 111.00121 * 306.04556 * 13 2 1 15 15 C 1.46905 * 110.99792 * 70.00184 * 13 2 1 16 16 C 1.50701 * 109.47067 * 75.61336 * 15 13 2 17 17 C 1.33394 * 122.54345 * 254.64430 * 16 15 13 18 18 S 1.75880 * 109.60769 * 180.02562 * 17 16 15 19 19 C 1.75886 * 90.97734 * 0.02562 * 18 17 16 20 20 C 1.33433 * 109.59721 * 359.72700 * 19 18 17 21 21 Br 1.89099 * 122.54787 * 180.24333 * 20 19 18 22 22 H 1.09006 * 109.46510 * 299.99786 * 1 2 3 23 23 H 1.08998 * 109.47615 * 59.99081 * 1 2 3 24 24 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47047 * 64.99627 * 4 2 1 26 26 H 1.08997 * 109.47270 * 304.99256 * 4 2 1 27 27 H 0.97001 * 119.99771 * 180.27453 * 8 7 5 28 28 H 1.08999 * 109.47387 * 65.77361 * 14 13 2 29 29 H 1.09003 * 109.47096 * 185.77015 * 14 13 2 30 30 H 1.08995 * 109.47390 * 305.76725 * 14 13 2 31 31 H 1.08999 * 109.46767 * 195.60870 * 15 13 2 32 32 H 1.08998 * 109.47205 * 315.61062 * 15 13 2 33 33 H 1.08006 * 125.19485 * 0.02562 * 17 16 15 34 34 H 1.08000 * 125.19857 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6151 1.3125 6 1 4.0790 -0.0863 0.5390 7 6 4.2306 -1.1938 2.3575 8 7 5.5417 -1.1056 2.4100 9 14 3.3017 -2.1090 3.6950 10 1 2.9469 -1.1655 4.7856 11 1 2.0622 -2.6950 3.1246 12 1 4.1577 -3.1941 4.2382 13 7 2.0195 -0.6925 -1.1995 14 6 1.4341 -2.0354 -1.3079 15 6 1.7527 0.0973 -2.4091 16 6 2.7302 1.2416 -2.4876 17 6 2.3832 2.5015 -2.2198 18 16 3.7794 3.5528 -2.4167 19 6 4.7860 2.1821 -2.8657 20 6 4.0578 1.0643 -2.8389 21 35 4.7823 -0.6320 -3.2553 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.7516 -1.7716 1.2054 26 1 1.6056 -0.2619 2.1369 27 1 6.0264 -1.5162 3.1430 28 1 0.3599 -1.9513 -1.4722 29 1 1.8895 -2.5637 -2.1456 30 1 1.6187 -2.5877 -0.3865 31 1 1.8640 -0.5366 -3.2888 32 1 0.7365 0.4896 -2.3701 33 1 1.3957 2.8263 -1.9269 34 1 5.8344 2.2363 -3.1192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709981346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:23 Heat of formation + Delta-G solvation = 46.138016 kcal Electronic energy + Delta-G solvation = -17310.386040 eV Core-core repulsion = 14609.693161 eV Total energy + Delta-G solvation = -2700.692879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89734 -36.88715 -32.77820 -31.26122 -30.73544 -29.14958 -27.80180 -26.63468 -24.43051 -22.86276 -21.74696 -18.97970 -18.22210 -17.30070 -16.50429 -15.49176 -15.29865 -14.75631 -13.97030 -13.52369 -13.12092 -12.93522 -12.83815 -12.61062 -12.38090 -12.10496 -11.74194 -11.63719 -11.28279 -11.21380 -10.88429 -10.65982 -10.57917 -10.26740 -10.18284 -9.70247 -9.58496 -9.48538 -8.94500 -8.51072 -8.35107 -8.05415 -7.46024 -5.83080 -3.76137 1.09453 1.47780 1.95276 2.63166 2.72724 3.38522 3.46630 3.48583 4.59759 4.67524 4.97984 5.22304 5.47993 5.50518 5.60637 5.66755 5.72502 5.81870 5.87235 5.94670 5.98047 6.09921 6.36217 6.39908 6.48794 6.54071 6.61832 6.84883 7.15477 7.39672 7.81691 7.86132 8.02610 8.80523 9.32163 9.80008 11.30937 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.013938 B = 0.006290 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.379268 B = 4450.131285 C = 4754.954292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.094 3.906 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.483 4.483 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.869 3.131 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.500 5.500 14 C 0.029 3.971 15 C 0.105 3.895 16 C -0.062 4.062 17 C -0.207 4.207 18 S 0.113 5.887 19 C -0.190 4.190 20 C -0.066 4.066 21 Br -0.018 7.018 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.017 0.983 26 H 0.010 0.990 27 H 0.258 0.742 28 H 0.015 0.985 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.165 0.835 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 5.244 -14.103 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.014 4.014 3 H 0.092 0.908 4 C -0.043 4.043 5 C -0.521 4.521 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.697 3.303 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.222 5.222 14 C -0.120 4.120 15 C -0.026 4.026 16 C -0.075 4.075 17 C -0.344 4.344 18 S 0.376 5.624 19 C -0.328 4.328 20 C -0.158 4.158 21 Br 0.066 6.934 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.182 0.818 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.068 6.068 -13.940 16.026 hybrid contribution -1.586 -1.523 0.879 2.368 sum -6.654 4.545 -13.060 15.346 Atomic orbital electron populations 1.22562 0.99934 1.01429 1.00776 1.21709 0.89578 0.98745 0.91339 0.90754 1.19679 0.98118 0.95243 0.91296 1.21032 0.89247 1.33500 1.08360 0.90178 1.24989 0.94623 0.96382 0.97733 1.69919 1.06281 1.46210 1.32286 0.86967 0.80240 0.80098 0.82961 1.20789 1.19414 1.21731 1.61982 1.58330 1.01569 1.00323 1.22362 0.95476 0.91165 1.02954 1.20819 0.94123 0.92551 0.95090 1.18600 0.93733 0.94759 1.00448 1.25331 1.02656 0.96015 1.10413 1.84082 1.01077 1.10317 1.66930 1.25550 1.03916 0.94813 1.08475 1.20529 0.95068 0.92556 1.07696 1.96678 1.83805 1.20891 1.92062 0.92613 0.93854 0.92729 0.96485 0.97148 0.93254 0.96686 0.92314 0.90373 0.90222 0.94044 0.81767 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.47 37.16 0.31 -2.65 16 2 C 0.09 1.83 2.17 -67.71 -0.15 1.68 16 3 H 0.07 1.53 6.95 -51.93 -0.36 1.17 16 4 C -0.01 -0.14 3.44 -27.88 -0.10 -0.24 16 5 C -0.48 -13.68 9.39 -34.44 -0.32 -14.00 16 6 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 9 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 N -0.50 -9.13 4.35 -236.34 -1.03 -10.15 16 14 C 0.03 0.47 8.58 60.06 0.52 0.99 16 15 C 0.10 1.60 4.57 -4.97 -0.02 1.58 16 16 C -0.06 -0.98 4.72 -106.23 -0.50 -1.48 16 17 C -0.21 -2.91 10.34 29.04 0.30 -2.61 16 18 S 0.11 1.48 23.34 -107.50 -2.51 -1.03 16 19 C -0.19 -2.80 11.05 29.05 0.32 -2.48 16 20 C -0.07 -1.09 6.16 -41.18 -0.25 -1.34 16 21 Br -0.02 -0.31 32.93 -68.01 -2.24 -2.55 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.60 6.45 -51.93 -0.34 0.26 16 24 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 25 H 0.02 0.41 5.29 -51.93 -0.27 0.13 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 29 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.08 1.46 6.14 -51.93 -0.32 1.14 16 31 H 0.08 1.15 7.61 -51.93 -0.39 0.76 16 32 H 0.04 0.57 6.08 -51.93 -0.32 0.26 16 33 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -31.12 304.93 -9.41 -40.53 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.35 Total: -2.32 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 0.01 Total: -18.82 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.25 Total: -37.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.51 Total: -1.03 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.24 Total: -2.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.12 -9.41 -40.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709981346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.667 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds