Wall clock time and date at job start Tue Mar 31 2020 11:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99593 * 3 2 1 5 5 H 1.48497 * 109.47515 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47194 * 119.99997 * 3 2 1 7 7 C 1.38950 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99493 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00375 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99795 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47318 * 179.97438 * 12 10 9 14 14 C 1.34709 * 116.99923 * 179.97438 * 13 12 10 15 15 O 1.21472 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.47731 * 119.99822 * 179.97438 * 14 13 12 17 17 C 1.39615 * 120.13294 * 180.02562 * 16 14 13 18 18 C 1.38079 * 119.85719 * 179.97438 * 17 16 14 19 19 Cl 1.73595 * 119.93079 * 179.97438 * 18 17 16 20 20 C 1.38455 * 120.13408 * 0.02562 * 18 17 16 21 21 C 1.38455 * 120.28408 * 359.95794 * 20 18 17 22 22 Cl 1.73595 * 119.93397 * 180.02562 * 21 20 18 23 23 C 1.38073 * 120.13482 * 0.04557 * 21 20 18 24 24 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99794 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46828 * 59.99478 * 12 10 9 27 27 H 1.09003 * 109.47044 * 300.00447 * 12 10 9 28 28 H 1.07993 * 120.07572 * 359.69996 * 17 16 14 29 29 H 1.08007 * 119.85886 * 179.97438 * 20 18 17 30 30 H 1.07993 * 120.07025 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 8 2.1874 -5.9666 0.0004 14 6 1.6725 -7.2114 0.0013 15 8 0.4682 -7.3705 0.0022 16 6 2.5724 -8.3830 0.0001 17 6 2.0418 -9.6744 0.0005 18 6 2.8882 -10.7653 -0.0012 19 17 2.2305 -12.3719 0.0000 20 6 4.2604 -10.5805 -0.0028 21 6 4.7927 -9.3024 -0.0035 22 17 6.5145 -9.0812 -0.0062 23 6 3.9569 -8.2034 -0.0018 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6168 -4.9209 -0.8886 27 1 0.6175 -4.9205 0.8913 28 1 0.9718 -9.8198 0.0066 29 1 4.9184 -11.4370 -0.0037 30 1 4.3733 -7.2069 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:36 Heat of formation + Delta-G solvation = -126.065694 kcal Electronic energy + Delta-G solvation = -20310.911002 eV Core-core repulsion = 16543.468600 eV Total energy + Delta-G solvation = -3767.442402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93071 -40.47298 -39.85505 -37.90799 -37.66312 -37.32345 -36.03525 -33.43032 -32.83100 -31.96269 -30.05797 -26.83749 -25.57617 -24.01203 -22.32453 -21.45319 -20.08396 -19.63671 -18.44500 -17.81278 -17.78711 -17.19997 -16.85228 -16.64639 -16.23175 -15.85327 -15.75480 -15.58030 -15.04984 -14.73328 -14.00308 -13.78677 -13.55212 -13.47303 -13.40507 -13.02605 -12.93615 -12.48726 -12.40368 -12.26782 -12.13097 -12.07754 -11.94271 -11.85677 -11.56979 -10.52279 -10.33165 -10.11884 -10.00447 -8.52283 -6.02841 -0.77696 -0.29180 0.56938 1.04147 1.12605 1.26207 1.37798 1.44294 1.55283 1.86973 2.23101 2.28946 2.92352 3.13440 3.36245 3.66323 3.72696 3.73710 3.89336 3.94853 4.14200 4.15476 4.21425 4.65498 4.75359 4.85248 5.07987 5.13759 5.37092 5.88521 6.37932 6.50420 7.02786 7.39700 7.92918 8.64451 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002608 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.012170 B =10734.339712 C =11998.207345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.072 3.928 13 O -0.335 6.335 14 C 0.511 3.489 15 O -0.517 6.517 16 C -0.107 4.107 17 C -0.038 4.038 18 C -0.036 4.036 19 Cl -0.034 7.034 20 C -0.053 4.053 21 C -0.039 4.039 22 Cl -0.041 7.041 23 C -0.050 4.050 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -23.139 0.001 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.250 6.250 14 C 0.356 3.644 15 O -0.407 6.407 16 C -0.108 4.108 17 C -0.057 4.057 18 C -0.063 4.063 19 Cl -0.004 7.004 20 C -0.072 4.072 21 C -0.066 4.066 22 Cl -0.012 7.012 23 C -0.069 4.069 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.179 0.821 29 H 0.195 0.805 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.252 -23.108 0.001 23.698 hybrid contribution -0.348 0.987 0.000 1.047 sum 4.904 -22.121 0.001 22.658 Atomic orbital electron populations 1.69665 1.06934 1.29799 1.49114 1.26112 0.96568 1.02559 0.95659 0.84933 0.77763 0.76195 0.79148 1.19491 1.19444 1.19481 1.19682 0.92959 0.83351 1.50699 0.89704 1.41723 1.09588 1.04149 1.63990 1.20053 0.88089 0.85311 0.84213 1.90531 1.15360 1.87658 1.56721 1.22616 0.90017 0.82063 1.05845 1.86570 1.40492 1.14517 1.83384 1.21257 0.87169 0.83393 0.72554 1.90835 1.16328 1.86890 1.46639 1.18728 0.92136 0.90598 1.09386 1.21286 1.02060 0.88730 0.93652 1.20499 0.92704 0.87379 1.05730 1.98416 1.85685 1.19547 1.96790 1.21435 0.93768 0.97057 0.94922 1.20633 0.86466 0.93799 1.05708 1.98420 1.08600 1.97418 1.96779 1.21580 0.91640 1.00309 0.93364 0.90955 0.76514 0.87108 0.87097 0.82134 0.80469 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.68 9.68 84.04 0.81 -17.87 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.99 5.29 -306.98 -1.62 -29.62 16 10 C 0.44 20.75 7.86 87.66 0.69 21.44 16 11 O -0.62 -34.11 16.08 15.74 0.25 -33.85 16 12 C 0.07 2.58 5.95 71.24 0.42 3.01 16 13 O -0.33 -11.86 9.01 -49.80 -0.45 -12.31 16 14 C 0.51 15.40 7.90 70.33 0.56 15.95 16 15 O -0.52 -16.70 16.14 19.93 0.32 -16.38 16 16 C -0.11 -2.54 5.87 -20.10 -0.12 -2.65 16 17 C -0.04 -0.73 9.37 22.56 0.21 -0.52 16 18 C -0.04 -0.56 6.31 22.28 0.14 -0.42 16 19 Cl -0.03 -0.45 28.95 -2.72 -0.08 -0.53 16 20 C -0.05 -0.74 9.60 22.37 0.21 -0.53 16 21 C -0.04 -0.70 6.31 22.28 0.14 -0.56 16 22 Cl -0.04 -0.73 28.95 -2.72 -0.08 -0.81 16 23 C -0.05 -1.12 9.40 22.56 0.21 -0.91 16 24 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 26 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.16 2.90 7.65 -2.91 -0.02 2.88 16 29 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.15 3.79 7.61 -2.91 -0.02 3.76 16 Total: -1.00 -64.95 315.04 4.90 -60.05 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.49 Total: 20.67 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 3.75 Total: 16.98 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.34 Total: -77.41 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: 0.13 Total: -62.55 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.16 Total: -1.34 kcal Total: -64.95 4.90 -60.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.012 kcal (2) G-P(sol) polarization free energy of solvation -64.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds