Wall clock time and date at job start Tue Mar 31 2020 11:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31395 * 1 3 3 Si 1.86802 * 120.00085 * 2 1 4 4 H 1.48489 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46617 * 299.99977 * 3 2 1 6 6 H 1.48501 * 109.47093 * 59.99406 * 3 2 1 7 7 C 1.39021 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00385 * 165.07203 * 7 2 1 9 9 N 1.36856 * 119.99834 * 345.07311 * 7 2 1 10 10 C 1.46497 * 120.00068 * 317.76652 * 9 7 2 11 11 C 1.50703 * 109.46931 * 263.79920 * 10 9 7 12 12 O 1.20826 * 120.00037 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00092 * 179.97438 * 11 10 9 14 14 C 1.34773 * 120.00146 * 137.76156 * 9 7 2 15 15 O 1.21756 * 120.00352 * 185.62006 * 14 9 7 16 16 C 1.46420 * 119.99769 * 5.61653 * 14 9 7 17 17 C 1.36720 * 125.98707 * 174.25834 * 16 14 9 18 18 C 1.40238 * 106.72952 * 180.02562 * 17 16 14 19 19 C 1.35347 * 107.12425 * 0.02562 * 18 17 16 20 20 Br 1.89103 * 125.61887 * 179.97438 * 19 18 17 21 21 O 1.33979 * 108.75558 * 359.97438 * 19 18 17 22 22 H 0.96995 * 120.00006 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47727 * 23.79949 * 10 9 7 24 24 H 1.09001 * 109.47612 * 143.80327 * 10 9 7 25 25 H 0.96702 * 116.99447 * 180.02562 * 13 11 10 26 26 H 1.08001 * 126.63656 * 0.28608 * 17 16 14 27 27 H 1.08003 * 126.43725 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7079 1.3464 0.0006 5 1 1.8892 2.3964 -1.2126 6 1 1.8891 2.3965 1.2124 7 6 2.0091 -1.2039 0.0005 8 1 3.0617 -1.2198 -0.2404 9 7 1.3595 -2.3690 0.3064 10 6 0.4022 -2.4048 1.4147 11 6 1.0895 -2.9133 2.6558 12 8 2.2590 -3.2145 2.6183 13 8 0.4026 -3.0307 3.8031 14 6 1.6003 -3.4835 -0.4122 15 8 0.9495 -4.4921 -0.2080 16 6 2.6445 -3.4814 -1.4386 17 6 3.0656 -4.5647 -2.1585 18 6 4.0737 -4.1095 -3.0206 19 6 4.2241 -2.7838 -2.7929 20 35 5.4507 -1.6470 -3.6756 21 8 3.3608 -2.4098 -1.8391 22 1 -0.4850 0.8400 -0.0004 23 1 0.0196 -1.4006 1.5970 24 1 -0.4245 -3.0678 1.1597 25 1 0.8864 -3.3610 4.5725 26 1 2.6910 -5.5748 -2.0816 27 1 4.6262 -4.7049 -3.7324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739086967.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:23 Heat of formation + Delta-G solvation = -109.959574 kcal Electronic energy + Delta-G solvation = -18982.015064 eV Core-core repulsion = 15560.134226 eV Total energy + Delta-G solvation = -3421.880839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.978 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.63323 -41.43032 -40.03159 -37.26225 -36.78608 -34.24241 -33.67607 -33.06594 -30.86399 -29.09766 -26.93480 -24.16928 -22.79024 -22.41293 -21.24762 -20.09074 -19.15905 -18.24592 -17.44045 -17.34352 -17.25634 -16.67042 -16.58738 -16.22494 -15.24396 -15.01793 -14.17423 -14.04494 -14.03627 -13.89543 -13.45255 -13.29837 -12.87094 -12.75627 -12.48273 -12.32341 -12.10898 -11.72489 -11.66525 -11.38101 -11.01696 -10.93736 -9.83559 -9.48927 -8.50177 -6.30191 -0.19016 -0.02805 1.19312 1.23704 1.38848 1.42387 1.55093 1.84366 2.12503 2.24515 2.40550 2.85113 3.04353 3.88735 3.97304 4.32319 4.42677 4.45342 4.62131 4.74063 4.80982 5.27878 5.40896 5.56853 5.64246 5.80064 6.24186 6.88609 7.01160 7.17616 7.59995 8.55538 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.006134 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.506012 B = 4563.979709 C = 5797.711772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.016 3.984 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.417 5.417 10 C 0.123 3.877 11 C 0.472 3.528 12 O -0.546 6.546 13 O -0.505 6.505 14 C 0.538 3.462 15 O -0.601 6.601 16 C -0.035 4.035 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.048 4.048 20 Br 0.069 6.931 21 O -0.134 6.134 22 H 0.283 0.717 23 H 0.141 0.859 24 H 0.106 0.894 25 H 0.424 0.576 26 H 0.175 0.825 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -1.021 -4.533 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.189 4.189 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.480 4.480 8 H 0.112 0.888 9 N -0.133 5.133 10 C -0.002 4.002 11 C 0.314 3.686 12 O -0.436 6.436 13 O -0.318 6.318 14 C 0.329 3.671 15 O -0.490 6.490 16 C -0.090 4.090 17 C -0.170 4.170 18 C -0.170 4.170 19 C -0.179 4.179 20 Br 0.153 6.847 21 O -0.029 6.029 22 H 0.093 0.907 23 H 0.158 0.842 24 H 0.123 0.877 25 H 0.285 0.715 26 H 0.193 0.807 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.781 -0.543 -4.929 9.227 hybrid contribution 0.249 0.231 0.791 0.861 sum 8.030 -0.312 -4.138 9.039 Atomic orbital electron populations 1.69881 1.07152 1.29697 1.45025 1.26229 0.96068 1.02626 0.93997 0.85122 0.79077 0.77221 0.78729 1.18803 1.19454 1.19042 1.19816 0.94603 0.83798 1.49817 0.88779 1.43081 1.37507 1.08868 1.23862 1.20933 0.91883 1.05613 0.81787 1.24434 0.85443 0.73024 0.85684 1.90635 1.19287 1.47805 1.85890 1.84502 1.47286 1.79235 1.20817 1.17333 0.83645 0.84710 0.81392 1.90683 1.51853 1.34934 1.71505 1.22252 0.98413 0.86293 1.02023 1.22139 0.98471 0.99748 0.96632 1.21939 1.00370 0.91941 1.02770 1.24932 0.98898 0.95899 0.98132 1.96761 1.50445 1.65849 1.71673 1.84636 1.39633 1.35604 1.43015 0.90724 0.84150 0.87656 0.71486 0.80724 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.21 11.50 21.68 0.25 -43.96 15 2 C 0.02 0.78 5.02 84.95 0.43 1.21 15 3 Si 0.98 39.21 29.58 68.60 2.03 41.24 15 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.35 -18.45 8.00 84.10 0.67 -17.77 15 8 H 0.09 5.04 5.87 -2.91 -0.02 5.03 15 9 N -0.42 -21.69 2.04 -644.41 -1.32 -23.01 15 10 C 0.12 5.75 5.48 85.63 0.47 6.22 15 11 C 0.47 20.26 8.35 71.24 0.59 20.86 15 12 O -0.55 -26.80 17.04 21.96 0.37 -26.43 15 13 O -0.51 -16.19 13.42 -51.43 -0.69 -16.88 15 14 C 0.54 28.06 7.36 86.37 0.64 28.69 15 15 O -0.60 -32.40 16.52 -4.53 -0.07 -32.48 15 16 C -0.04 -1.61 6.82 24.05 0.16 -1.45 15 17 C -0.15 -5.48 10.62 22.40 0.24 -5.24 15 18 C -0.15 -4.51 10.82 22.09 0.24 -4.28 15 19 C -0.05 -1.68 7.80 67.15 0.52 -1.16 15 20 Br 0.07 1.86 34.09 -20.37 -0.69 1.17 15 21 O -0.13 -5.94 7.51 -6.03 -0.05 -5.98 15 22 H 0.28 13.08 8.31 -92.71 -0.77 12.31 15 23 H 0.14 6.65 5.74 -2.39 -0.01 6.64 15 24 H 0.11 4.83 7.54 -2.39 -0.02 4.82 15 25 H 0.42 8.98 9.10 -74.06 -0.67 8.31 15 26 H 0.18 5.76 8.06 -2.91 -0.02 5.74 15 27 H 0.20 4.14 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -65.83 275.97 4.38 -61.45 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.58 Total: 17.80 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 3.96 Total: 27.08 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.07 Total: -66.96 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -0.44 Total: -81.77 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 35 Polarization: 1.86 SS G_CDS: -0.69 Total: 1.17 kcal Total: -65.83 4.38 -61.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086967.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.509 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds