Wall clock time and date at job start Tue Mar 31 2020 11:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86805 * 119.99729 * 2 1 4 4 H 1.48501 * 109.46874 * 270.00334 * 3 2 1 5 5 H 1.48501 * 109.47199 * 30.00155 * 3 2 1 6 6 H 1.48496 * 109.46838 * 149.99997 * 3 2 1 7 7 C 1.39037 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99500 * 202.65114 * 7 2 1 9 9 N 1.36879 * 120.00078 * 22.64384 * 7 2 1 10 10 C 1.46497 * 120.00046 * 5.60077 * 9 7 2 11 11 C 1.50699 * 109.47568 * 273.28598 * 10 9 7 12 12 O 1.20823 * 119.99530 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99740 * 185.60471 * 9 7 2 15 15 O 1.21601 * 120.00195 * 6.13800 * 14 9 7 16 16 C 1.47658 * 119.99816 * 185.86799 * 14 9 7 17 17 C 1.39694 * 120.15637 * 56.29806 * 16 14 9 18 18 C 1.37881 * 119.88321 * 179.76866 * 17 16 14 19 19 C 1.38414 * 120.20297 * 0.50908 * 18 17 16 20 20 C 1.38398 * 120.31565 * 359.74750 * 19 18 17 21 21 Cl 1.73603 * 119.94439 * 179.97438 * 20 19 18 22 22 C 1.38249 * 120.11017 * 359.97438 * 20 19 18 23 23 Cl 1.73594 * 120.10068 * 180.02562 * 22 20 19 24 24 H 0.96996 * 120.00346 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 33.29166 * 10 9 7 26 26 H 1.09005 * 109.46974 * 153.28159 * 10 9 7 27 27 H 0.96696 * 116.99901 * 180.02562 * 13 11 10 28 28 H 1.07998 * 120.05791 * 359.97438 * 17 16 14 29 29 H 1.08001 * 119.89673 * 180.23118 * 18 17 16 30 30 H 1.08008 * 119.84530 * 179.76429 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4403 0.7000 7 6 2.0089 -1.2041 -0.0005 8 1 3.0264 -1.2402 0.3597 9 7 1.4037 -2.3436 -0.4574 10 6 0.0697 -2.2738 -1.0590 11 6 -0.9749 -2.3698 0.0229 12 8 -0.6395 -2.4852 1.1779 13 8 -2.2779 -2.3281 -0.2967 14 6 2.0350 -3.5299 -0.3538 15 8 3.0910 -3.6065 0.2443 16 6 1.4414 -4.7377 -0.9614 17 6 1.1344 -4.7592 -2.3240 18 6 0.5847 -5.8917 -2.8865 19 6 0.3264 -7.0032 -2.1031 20 6 0.6223 -6.9891 -0.7512 21 17 0.2937 -8.3883 0.2224 22 6 1.1790 -5.8625 -0.1749 23 17 1.5507 -5.8453 1.5207 24 1 -0.4850 0.8400 0.0004 25 1 -0.0411 -1.3274 -1.5882 26 1 -0.0563 -3.0989 -1.7600 27 1 -2.9108 -2.3929 0.4315 28 1 1.3305 -3.8916 -2.9365 29 1 0.3507 -5.9100 -3.9407 30 1 -0.1079 -7.8859 -2.5490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088567.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:24 Heat of formation + Delta-G solvation = -88.768148 kcal Electronic energy + Delta-G solvation = -22495.954466 eV Core-core repulsion = 18730.129407 eV Total energy + Delta-G solvation = -3765.825059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97990 -38.91807 -37.77416 -36.38499 -36.09301 -35.26810 -34.51836 -32.11429 -30.77890 -30.53107 -27.78449 -25.43468 -23.24731 -22.62261 -21.11036 -19.76553 -17.46094 -17.12413 -16.91311 -16.37459 -15.89767 -15.43607 -15.31765 -14.52133 -14.46443 -14.23745 -14.07943 -13.76258 -13.12696 -12.93302 -12.16581 -11.99164 -11.79136 -11.67684 -11.62291 -11.52070 -11.21219 -11.00540 -10.95273 -10.50139 -10.44033 -10.39674 -10.35411 -9.65443 -9.11755 -8.88362 -8.61111 -8.55957 -8.12971 -6.62393 -3.96949 0.99204 1.07602 1.97951 2.48339 3.03450 3.17131 3.22734 3.30555 3.54184 3.62498 3.99014 4.22514 4.48223 4.79713 4.94325 5.00732 5.16874 5.22491 5.43902 5.66922 5.79323 5.96993 6.15652 6.29420 6.44285 6.55021 6.61341 7.39232 7.54262 7.76970 8.21261 8.91971 9.03324 9.16645 9.65903 10.44942 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.005230 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.379661 B = 5352.284866 C = 5562.101805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.294 4.294 8 H 0.115 0.885 9 N -0.414 5.414 10 C 0.135 3.865 11 C 0.494 3.506 12 O -0.503 6.503 13 O -0.534 6.534 14 C 0.484 3.516 15 O -0.555 6.555 16 C -0.075 4.075 17 C -0.091 4.091 18 C -0.108 4.108 19 C -0.102 4.102 20 C -0.036 4.036 21 Cl -0.057 7.057 22 C -0.001 4.001 23 Cl -0.027 7.027 24 H 0.275 0.725 25 H 0.134 0.866 26 H 0.081 0.919 27 H 0.391 0.609 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 -9.595 -7.628 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.421 4.421 8 H 0.133 0.867 9 N -0.132 5.132 10 C 0.009 3.991 11 C 0.334 3.666 12 O -0.388 6.388 13 O -0.345 6.345 14 C 0.272 3.728 15 O -0.437 6.437 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.063 4.063 21 Cl -0.028 7.028 22 C -0.030 4.030 23 Cl 0.003 6.997 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.098 0.902 27 H 0.248 0.752 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.832 -9.568 -7.042 12.483 hybrid contribution -0.404 0.727 0.880 1.210 sum -4.236 -8.841 -6.163 11.580 Atomic orbital electron populations 1.69695 1.06229 1.28321 1.47449 1.25287 0.95373 1.00237 0.96436 0.85748 0.79522 0.79979 0.78510 1.20048 1.20957 1.19147 1.19887 0.98699 0.82887 1.40625 0.86726 1.43484 1.12342 1.06114 1.51217 1.21090 0.80970 1.04836 0.92197 1.23537 0.81366 0.70689 0.90973 1.90623 1.81286 1.45195 1.21693 1.84495 1.18690 1.86928 1.44434 1.17466 0.87830 0.81755 0.85753 1.90681 1.24093 1.83975 1.44993 1.20244 0.98922 0.94926 0.93892 1.21472 0.97221 0.99070 0.93277 1.21090 0.99019 0.92217 1.00291 1.21035 1.00520 0.99811 0.90731 1.20661 1.04362 0.88697 0.92629 1.98366 1.93919 1.39604 1.70925 1.20795 1.00776 0.93571 0.87818 1.98413 1.92452 1.98412 1.10473 0.91405 0.84886 0.90170 0.75243 0.83845 0.84171 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.92 8.63 55.50 0.48 -21.44 16 2 C 0.03 0.74 5.01 -17.45 -0.09 0.65 16 3 Si 0.94 19.76 29.61 -169.99 -5.03 14.72 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.29 -7.81 9.40 -15.00 -0.14 -7.95 16 8 H 0.12 3.21 7.30 -52.49 -0.38 2.83 16 9 N -0.41 -10.14 2.13 -117.24 -0.25 -10.39 16 10 C 0.14 2.88 5.13 -5.20 -0.03 2.85 16 11 C 0.49 11.13 6.28 36.01 0.23 11.36 16 12 O -0.50 -13.35 16.88 -18.75 -0.32 -13.67 16 13 O -0.53 -9.81 13.42 -39.24 -0.53 -10.34 16 14 C 0.48 11.67 6.45 -12.41 -0.08 11.59 16 15 O -0.55 -15.22 15.90 5.28 0.08 -15.13 16 16 C -0.08 -1.47 4.87 -104.95 -0.51 -1.98 16 17 C -0.09 -1.36 7.52 -39.17 -0.29 -1.66 16 18 C -0.11 -1.25 10.03 -39.65 -0.40 -1.65 16 19 C -0.10 -1.23 9.82 -39.46 -0.39 -1.62 16 20 C -0.04 -0.55 6.32 -39.52 -0.25 -0.80 16 21 Cl -0.06 -0.79 27.95 -51.86 -1.45 -2.24 16 22 C 0.00 -0.01 6.35 -39.02 -0.25 -0.26 16 23 Cl -0.03 -0.55 26.46 -51.86 -1.37 -1.93 16 24 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 25 H 0.13 2.88 6.25 -51.93 -0.32 2.56 16 26 H 0.08 1.42 4.55 -51.93 -0.24 1.19 16 27 H 0.39 5.63 9.10 45.56 0.41 6.05 16 28 H 0.14 1.90 7.66 -52.49 -0.40 1.50 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 298.75 15.07 4.50 4.50 Total: -1.00 -32.66 298.75 -6.99 -39.65 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -0.91 Total: 5.71 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -2.20 Total: 10.55 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.23 Total: -31.83 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.76 Total: -39.14 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -2.82 Total: -4.17 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.66 -6.99 -39.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088567.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.116 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds