Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48490 * 109.47066 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47138 * 30.00112 * 3 2 1 6 6 H 1.48504 * 109.46985 * 149.99719 * 3 2 1 7 7 C 1.38756 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 0.02562 * 7 2 1 9 9 O 1.34920 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.34317 * 117.00008 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99404 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00414 * 179.97438 * 10 9 7 13 13 S 1.81402 * 109.47514 * 179.97438 * 12 10 9 14 14 C 1.76197 * 102.99909 * 179.97438 * 13 12 10 15 15 C 1.38977 * 120.07014 * 0.25499 * 14 13 12 16 16 C 1.38064 * 119.93248 * 180.23312 * 15 14 13 17 17 C 1.38416 * 120.06766 * 359.48748 * 16 15 14 18 18 Cl 1.73600 * 119.93442 * 180.25580 * 17 16 15 19 19 C 1.38380 * 120.13343 * 0.28264 * 17 16 15 20 20 C 1.38100 * 120.06736 * 359.97134 * 19 17 16 21 21 N 1.48010 * 120.03566 * 179.97438 * 20 19 17 22 22 O 1.21799 * 119.99850 * 0.02562 * 21 20 19 23 23 O 1.21796 * 120.00183 * 180.02562 * 21 20 19 24 24 H 0.96996 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47178 * 59.99808 * 12 10 9 26 26 H 1.09000 * 109.47381 * 300.00071 * 12 10 9 27 27 H 1.07998 * 120.03115 * 359.97438 * 15 14 13 28 28 H 1.08002 * 119.96953 * 179.77244 * 16 15 14 29 29 H 1.08000 * 119.96668 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3984 0.0010 11 8 3.3069 -3.4149 0.0001 12 6 5.4720 -2.4773 0.0010 13 16 5.9864 -4.2169 0.0017 14 6 7.7451 -4.1101 0.0009 15 6 8.3674 -2.8674 0.0052 16 6 9.7456 -2.7871 -0.0003 17 6 10.5077 -3.9426 0.0005 18 17 12.2405 -3.8375 0.0002 19 6 9.8911 -5.1814 0.0009 20 6 8.5128 -5.2683 0.0012 21 7 7.8540 -6.5936 0.0011 22 8 8.5275 -7.6085 0.0013 23 8 6.6384 -6.6695 0.0009 24 1 -0.4850 0.8400 0.0004 25 1 5.8618 -1.9832 0.8909 26 1 5.8618 -1.9832 -0.8889 27 1 7.7733 -1.9655 0.0088 28 1 10.2298 -1.8217 -0.0006 29 1 10.4883 -6.0813 0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751633725.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -47.919533 kcal Electronic energy + Delta-G solvation = -20605.913325 eV Core-core repulsion = 16843.903301 eV Total energy + Delta-G solvation = -3762.010024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.000 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31675 -39.78785 -39.38068 -37.11717 -36.68274 -35.64526 -32.60258 -32.46741 -31.90096 -30.11131 -26.91100 -25.45360 -23.78649 -22.97379 -20.60620 -19.75042 -18.79272 -18.21013 -17.88440 -17.68084 -16.97391 -16.39706 -16.24668 -15.62076 -15.23401 -14.88825 -14.39596 -14.33930 -13.88138 -13.31819 -13.13840 -12.63763 -12.43468 -12.42589 -12.25346 -11.86199 -11.64425 -11.39980 -11.36437 -11.23768 -10.66781 -10.55533 -10.19265 -10.16613 -10.04508 -9.84117 -9.50329 -8.83405 -7.85609 -6.51098 -4.28417 -0.52046 0.18535 0.81614 1.02972 1.04757 1.55683 2.00657 2.59292 2.90832 3.12749 3.17359 3.23596 3.78038 3.79922 4.10375 4.13310 4.24934 4.32553 4.82445 4.83881 4.84739 5.05918 5.12330 5.14444 5.27730 5.59605 5.99007 6.19586 7.50616 7.52273 7.87933 8.38742 8.84427 9.43835 10.56640 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.003269 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.474799 B = 8562.278274 C =10005.609061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.385 4.385 8 H 0.113 0.887 9 O -0.241 6.241 10 C 0.423 3.577 11 O -0.519 6.519 12 C -0.170 4.170 13 S 0.132 5.868 14 C -0.058 4.058 15 C -0.131 4.131 16 C -0.033 4.033 17 C -0.060 4.060 18 Cl -0.044 7.044 19 C -0.022 4.022 20 C -0.034 4.034 21 N 0.032 4.968 22 O -0.167 6.167 23 O -0.133 6.133 24 H 0.282 0.718 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.263 -3.290 0.019 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.131 0.869 9 O -0.150 6.150 10 C 0.267 3.733 11 O -0.413 6.413 12 C -0.318 4.318 13 S 0.385 5.615 14 C -0.176 4.176 15 C -0.157 4.157 16 C -0.054 4.054 17 C -0.091 4.091 18 Cl -0.015 7.015 19 C -0.043 4.043 20 C -0.127 4.127 21 N 0.546 4.454 22 O -0.378 6.378 23 O -0.346 6.346 24 H 0.092 0.908 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 23.365 -3.721 0.023 23.660 hybrid contribution 1.109 1.688 -0.015 2.019 sum 24.474 -2.033 0.008 24.558 Atomic orbital electron populations 1.69594 1.05694 1.28666 1.46503 1.24553 0.95024 0.98703 0.95351 0.86219 0.80229 0.81496 0.78984 1.19743 1.20527 1.18501 1.20691 0.75550 0.97257 1.52504 0.86919 1.83465 1.24402 1.30376 1.76708 1.21479 0.88023 0.83443 0.80370 1.90687 1.65894 1.35730 1.49034 1.23832 0.97280 1.02391 1.08303 1.88131 0.87927 1.01969 1.83507 1.22573 1.03287 0.94326 0.97398 1.21276 0.94841 0.95885 1.03695 1.21397 0.93135 0.98456 0.92460 1.20523 0.86329 0.93582 1.08709 1.98409 1.07707 1.98460 1.96952 1.20698 0.91436 0.98956 0.93248 1.20216 0.92214 0.82210 1.18107 1.43429 1.01202 1.02344 0.98469 1.94526 1.64551 1.24551 1.54206 1.94541 0.95195 1.92087 1.52817 0.90766 0.86088 0.86075 0.82446 0.82769 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.74 13.96 55.48 0.77 -23.97 15 2 C 0.07 1.88 5.49 -17.53 -0.10 1.79 15 3 Si 0.91 20.18 28.62 -169.99 -4.86 15.31 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 7 C -0.38 -10.93 10.10 30.92 0.31 -10.62 15 8 H 0.11 3.56 7.09 -52.48 -0.37 3.19 15 9 O -0.24 -5.93 8.58 -20.72 -0.18 -6.11 15 10 C 0.42 9.18 7.92 36.00 0.29 9.46 15 11 O -0.52 -13.08 15.10 -19.06 -0.29 -13.37 15 12 C -0.17 -2.44 4.93 36.00 0.18 -2.26 15 13 S 0.13 1.95 17.88 -107.50 -1.92 0.03 15 14 C -0.06 -0.66 6.11 -39.05 -0.24 -0.90 15 15 C -0.13 -1.08 9.36 -39.37 -0.37 -1.45 15 16 C -0.03 -0.22 9.82 -39.58 -0.39 -0.61 15 17 C -0.06 -0.45 6.32 -39.46 -0.25 -0.70 15 18 Cl -0.04 -0.30 28.95 -51.86 -1.50 -1.80 15 19 C -0.02 -0.20 9.33 -39.58 -0.37 -0.57 15 20 C -0.03 -0.40 6.87 -79.74 -0.55 -0.95 15 21 N 0.03 0.45 4.45 34.06 0.15 0.60 15 22 O -0.17 -2.36 18.45 -29.46 -0.54 -2.91 15 23 O -0.13 -2.14 15.81 -29.46 -0.47 -2.61 15 24 H 0.28 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.12 1.39 7.74 -51.93 -0.40 0.98 15 26 H 0.12 1.38 7.76 -51.92 -0.40 0.97 15 27 H 0.16 1.01 5.88 -52.49 -0.31 0.71 15 28 H 0.15 0.61 8.06 -52.49 -0.42 0.19 15 29 H 0.16 1.27 7.61 -52.49 -0.40 0.87 15 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -32.33 301.81 -7.21 -39.54 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -1.44 Total: -2.45 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.48 Total: -6.82 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.93 Total: -23.37 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.47 Total: -24.99 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.86 Total: 15.31 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.92 Total: 0.03 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.33 -7.21 -39.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751633725.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.378 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds