Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48490 * 109.47066 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47138 * 30.00112 * 3 2 1 6 6 H 1.48504 * 109.46985 * 149.99719 * 3 2 1 7 7 C 1.38756 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 0.02562 * 7 2 1 9 9 O 1.34920 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.34317 * 117.00008 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99404 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00414 * 179.97438 * 10 9 7 13 13 S 1.81402 * 109.47514 * 179.97438 * 12 10 9 14 14 C 1.76197 * 102.99909 * 179.97438 * 13 12 10 15 15 C 1.38977 * 120.07014 * 0.25499 * 14 13 12 16 16 C 1.38064 * 119.93248 * 180.23312 * 15 14 13 17 17 C 1.38416 * 120.06766 * 359.48748 * 16 15 14 18 18 Cl 1.73600 * 119.93442 * 180.25580 * 17 16 15 19 19 C 1.38380 * 120.13343 * 0.28264 * 17 16 15 20 20 C 1.38100 * 120.06736 * 359.97134 * 19 17 16 21 21 N 1.48010 * 120.03566 * 179.97438 * 20 19 17 22 22 O 1.21799 * 119.99850 * 0.02562 * 21 20 19 23 23 O 1.21796 * 120.00183 * 180.02562 * 21 20 19 24 24 H 0.96996 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47178 * 59.99808 * 12 10 9 26 26 H 1.09000 * 109.47381 * 300.00071 * 12 10 9 27 27 H 1.07998 * 120.03115 * 359.97438 * 15 14 13 28 28 H 1.08002 * 119.96953 * 179.77244 * 16 15 14 29 29 H 1.08000 * 119.96668 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4459 2.6526 0.7000 6 1 3.5460 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2016 0.0011 10 6 3.9672 -2.3984 0.0010 11 8 3.3069 -3.4149 0.0001 12 6 5.4720 -2.4773 0.0010 13 16 5.9864 -4.2169 0.0017 14 6 7.7451 -4.1101 0.0009 15 6 8.3674 -2.8674 0.0052 16 6 9.7456 -2.7871 -0.0003 17 6 10.5077 -3.9426 0.0005 18 17 12.2405 -3.8375 0.0002 19 6 9.8911 -5.1814 0.0009 20 6 8.5128 -5.2683 0.0012 21 7 7.8540 -6.5936 0.0011 22 8 8.5275 -7.6085 0.0013 23 8 6.6384 -6.6695 0.0009 24 1 -0.4850 0.8400 0.0004 25 1 5.8618 -1.9832 0.8909 26 1 5.8618 -1.9832 -0.8889 27 1 7.7733 -1.9655 0.0088 28 1 10.2298 -1.8217 -0.0006 29 1 10.4883 -6.0813 0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751633725.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -67.205592 kcal Electronic energy + Delta-G solvation = -20606.749631 eV Core-core repulsion = 16843.903301 eV Total energy + Delta-G solvation = -3762.846330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.000 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.33890 -41.23561 -40.53500 -37.81217 -37.68199 -37.55079 -34.55614 -33.37466 -32.69445 -31.40233 -27.86690 -27.43029 -24.49991 -23.90526 -22.24519 -20.76686 -20.23289 -19.83267 -18.96501 -18.71136 -18.50270 -17.24600 -17.18892 -17.03471 -16.77276 -16.08368 -15.52323 -15.26791 -15.18869 -14.54571 -14.48219 -14.09326 -13.79451 -13.27779 -13.25744 -13.05892 -12.84062 -12.62915 -12.44202 -12.38185 -12.31438 -12.13674 -11.88484 -11.33343 -11.03495 -10.94396 -10.86428 -10.83366 -8.88253 -8.56775 -6.46027 -1.43781 -0.51264 -0.22830 0.10942 0.17838 0.81946 1.05687 1.20250 1.35421 1.49137 1.56592 1.89547 2.21659 2.28542 2.88573 3.05280 3.50184 3.54079 3.62850 3.89100 4.00622 4.09636 4.20285 4.30635 4.50818 4.67625 4.93651 5.19411 5.42386 5.83359 6.37060 6.43770 6.76988 7.44571 8.55760 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.003269 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.474799 B = 8562.278274 C =10005.609061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.241 1.241 7 C -0.411 4.411 8 H 0.056 0.944 9 O -0.244 6.244 10 C 0.424 3.576 11 O -0.562 6.562 12 C -0.148 4.148 13 S 0.056 5.944 14 C -0.057 4.057 15 C -0.121 4.121 16 C -0.012 4.012 17 C -0.051 4.051 18 Cl -0.029 7.029 19 C -0.023 4.023 20 C -0.048 4.048 21 N 0.032 4.968 22 O -0.158 6.158 23 O -0.192 6.192 24 H 0.290 0.710 25 H 0.161 0.839 26 H 0.162 0.838 27 H 0.185 0.815 28 H 0.195 0.805 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.840 -0.137 0.029 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.164 1.164 7 C -0.487 4.487 8 H 0.074 0.926 9 O -0.153 6.153 10 C 0.270 3.730 11 O -0.457 6.457 12 C -0.295 4.295 13 S 0.306 5.694 14 C -0.175 4.175 15 C -0.146 4.146 16 C -0.033 4.033 17 C -0.083 4.083 18 Cl 0.000 7.000 19 C -0.044 4.044 20 C -0.141 4.141 21 N 0.541 4.459 22 O -0.375 6.375 23 O -0.393 6.393 24 H 0.100 0.900 25 H 0.179 0.821 26 H 0.180 0.820 27 H 0.202 0.798 28 H 0.212 0.788 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 27.881 -0.585 0.033 27.887 hybrid contribution -0.006 0.532 -0.021 0.532 sum 27.875 -0.053 0.012 27.875 Atomic orbital electron populations 1.69709 1.07828 1.30436 1.47449 1.25662 0.95999 1.03016 0.93873 0.85022 0.79253 0.75179 0.79915 1.18308 1.19397 1.16376 1.20300 0.77404 0.95864 1.55118 0.92593 1.83467 1.22110 1.31672 1.78030 1.22993 0.91088 0.81972 0.76948 1.90682 1.67969 1.37142 1.49931 1.23797 0.90927 1.02742 1.12073 1.88583 0.92246 1.02893 1.85691 1.22390 1.00347 0.95552 0.99167 1.21650 0.95746 0.95150 1.02062 1.21857 0.92309 0.99732 0.89432 1.20685 0.87221 0.93297 1.07047 1.98432 1.06408 1.98374 1.96755 1.20869 0.90223 1.00373 0.92930 1.20375 0.93087 0.80637 1.19990 1.43843 1.00998 1.03390 0.97714 1.94476 1.64206 1.25887 1.52970 1.94559 0.96226 1.92643 1.55853 0.89960 0.82127 0.82040 0.79801 0.78768 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.96 21.62 0.30 -53.72 15 2 C 0.01 0.83 5.49 84.88 0.47 1.30 15 3 Si 0.99 40.53 28.62 68.60 1.96 42.50 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.24 -9.03 7.11 99.48 0.71 -8.32 15 7 C -0.41 -24.37 10.10 67.94 0.69 -23.68 15 8 H 0.06 3.85 7.09 -2.91 -0.02 3.83 15 9 O -0.24 -11.99 8.58 14.82 0.13 -11.87 15 10 C 0.42 18.54 7.92 71.23 0.56 19.10 15 11 O -0.56 -29.92 15.10 20.76 0.31 -29.60 15 12 C -0.15 -3.89 4.93 71.23 0.35 -3.54 15 13 S 0.06 1.64 17.88 -56.49 -1.01 0.63 15 14 C -0.06 -1.18 6.11 22.62 0.14 -1.04 15 15 C -0.12 -1.41 9.36 22.41 0.21 -1.20 15 16 C -0.01 -0.09 9.82 22.27 0.22 0.13 15 17 C -0.05 -0.56 6.32 22.35 0.14 -0.41 15 18 Cl -0.03 -0.27 28.95 -2.72 -0.08 -0.35 15 19 C -0.02 -0.36 9.33 22.27 0.21 -0.15 15 20 C -0.05 -1.06 6.87 36.51 0.25 -0.81 15 21 N 0.03 0.94 4.45 -46.14 -0.21 0.73 15 22 O -0.16 -4.50 18.45 18.89 0.35 -4.15 15 23 O -0.19 -6.65 15.81 18.89 0.30 -6.35 15 24 H 0.29 15.40 8.31 -92.71 -0.77 14.63 15 25 H 0.16 2.97 7.74 -2.39 -0.02 2.95 15 26 H 0.16 2.95 7.76 -2.39 -0.02 2.94 15 27 H 0.18 1.18 5.88 -2.91 -0.02 1.16 15 28 H 0.20 0.06 8.06 -2.91 -0.02 0.04 15 29 H 0.17 2.29 7.61 -2.91 -0.02 2.27 15 Total: -1.00 -78.58 301.81 6.52 -72.06 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: 1.23 Total: 0.42 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 3.23 Total: -10.31 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.10 Total: -52.99 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: 1.09 Total: -51.97 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.96 Total: 42.50 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.01 Total: 0.63 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -78.58 6.52 -72.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751633725.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.851 kcal (2) G-P(sol) polarization free energy of solvation -78.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds