Wall clock time and date at job start Tue Mar 31 2020 12:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46743 * 299.99663 * 3 2 1 6 6 H 1.48496 * 109.47216 * 59.99541 * 3 2 1 7 7 C 1.38946 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00302 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99771 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00591 * 179.97438 * 10 9 7 13 13 O 1.45191 * 109.47535 * 179.97438 * 12 10 9 14 14 C 1.34754 * 117.00123 * 179.97438 * 13 12 10 15 15 O 1.21502 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.47402 * 120.00006 * 179.97438 * 14 13 12 17 17 C 1.39808 * 120.18139 * 359.97438 * 16 14 13 18 18 C 1.37952 * 119.89791 * 180.02562 * 17 16 14 19 19 F 1.35105 * 119.86415 * 180.02562 * 18 17 16 20 20 C 1.38739 * 120.26470 * 0.02562 * 18 17 16 21 21 C 1.38129 * 120.36850 * 359.70148 * 20 18 17 22 22 Cl 1.73600 * 119.95385 * 180.27805 * 21 20 18 23 23 C 1.38801 * 120.09757 * 0.55653 * 21 20 18 24 24 O 1.35699 * 120.13608 * 179.74217 * 23 21 20 25 25 H 0.97001 * 119.99857 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99881 * 359.97438 * 9 7 2 27 27 H 1.09010 * 109.46719 * 59.99428 * 12 10 9 28 28 H 1.09000 * 109.46722 * 300.00422 * 12 10 9 29 29 H 1.08000 * 120.05029 * 0.02562 * 17 16 14 30 30 H 1.08000 * 119.81659 * 179.97438 * 20 18 17 31 31 H 0.96700 * 114.00288 * 269.72516 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8630 0.0011 13 8 2.1875 -5.9665 0.0004 14 6 1.6725 -7.2117 0.0013 15 8 0.4680 -7.3709 0.0022 16 6 2.5705 -8.3807 0.0001 17 6 3.9571 -8.2018 -0.0026 18 6 4.7920 -9.3000 -0.0043 19 9 6.1319 -9.1263 -0.0063 20 6 4.2614 -10.5819 -0.0038 21 6 2.8931 -10.7713 0.0045 22 17 2.2408 -12.3800 0.0122 23 6 2.0390 -9.6772 0.0008 24 8 0.6947 -9.8624 0.0037 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6169 -4.9208 -0.8887 28 1 0.6176 -4.9204 0.8913 29 1 4.3738 -7.2055 -0.0033 30 1 4.9217 -11.4364 -0.0056 31 1 0.3031 -9.9159 -0.8788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751734529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:07 Heat of formation + Delta-G solvation = -181.897280 kcal Electronic energy + Delta-G solvation = -22903.934856 eV Core-core repulsion = 18705.735040 eV Total energy + Delta-G solvation = -4198.199816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -49.30465 -40.93101 -39.54888 -38.11937 -37.15618 -36.86939 -36.06843 -34.04444 -32.04180 -31.40722 -29.85482 -28.46893 -25.28395 -24.37292 -23.18587 -21.36685 -19.64646 -18.96631 -18.56313 -18.13623 -17.61240 -16.81163 -16.58723 -16.18181 -16.06012 -15.78350 -15.51338 -15.16452 -14.57911 -14.25546 -14.16549 -14.02184 -13.76290 -13.18604 -12.98293 -12.46237 -12.43296 -12.08159 -11.67591 -11.65818 -11.64019 -11.32053 -11.17857 -10.51623 -10.50759 -10.41562 -10.32804 -9.65409 -9.61246 -9.02547 -8.57868 -8.12167 -6.53436 -3.95604 -0.00852 0.38242 1.43673 2.14333 2.48159 2.99346 3.09516 3.22129 3.29311 3.52313 3.65287 3.69035 4.03112 4.20027 4.40932 4.47222 4.73510 4.96897 5.06418 5.11403 5.18376 5.34580 5.43867 5.59011 5.63029 5.99119 6.04104 6.43243 7.15517 7.44924 7.66970 7.90846 8.44050 9.03562 9.35175 9.84471 10.63743 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.002611 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.325724 B =10720.312746 C =11731.894152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.063 3.937 13 O -0.320 6.320 14 C 0.506 3.494 15 O -0.485 6.485 16 C -0.108 4.108 17 C -0.073 4.073 18 C 0.094 3.906 19 F -0.124 7.124 20 C -0.100 4.100 21 C -0.055 4.055 22 Cl -0.035 7.035 23 C 0.175 3.825 24 O -0.462 6.462 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.170 0.830 30 H 0.157 0.843 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 -22.157 -1.717 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.235 6.235 14 C 0.348 3.652 15 O -0.374 6.374 16 C -0.111 4.111 17 C -0.092 4.092 18 C 0.075 3.925 19 F -0.102 7.102 20 C -0.120 4.120 21 C -0.083 4.083 22 Cl -0.006 7.006 23 C 0.127 3.873 24 O -0.273 6.273 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.187 0.813 30 H 0.174 0.826 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.731 -22.124 -1.119 22.464 hybrid contribution -0.313 0.732 -0.458 0.919 sum 3.418 -21.392 -1.578 21.721 Atomic orbital electron populations 1.69622 1.06015 1.28447 1.49589 1.25323 0.95692 0.99908 0.96828 0.85741 0.79723 0.80711 0.77836 1.19062 1.20594 1.20593 1.19775 0.93515 0.81690 1.48147 0.87520 1.41706 1.09406 1.04079 1.63654 1.19275 0.88330 0.84015 0.86158 1.90565 1.13362 1.86760 1.55361 1.22813 0.90717 0.84160 1.03781 1.86577 1.40170 1.13684 1.83077 1.20567 0.86864 0.83514 0.74207 1.90883 1.15246 1.86699 1.44554 1.19232 0.92704 0.90907 1.08227 1.21707 0.91648 1.00802 0.95009 1.17205 0.78092 0.92866 1.04385 1.91584 1.28738 1.96056 1.93835 1.21134 0.93841 0.97350 0.99651 1.20822 0.92650 0.87142 1.07679 1.98404 1.86095 1.19322 1.96768 1.18054 0.84680 0.88673 0.95901 1.84802 1.14640 1.94053 1.33837 0.91629 0.77124 0.89282 0.89237 0.81268 0.82582 0.73871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.61 5.29 -10.97 -0.06 -13.67 16 10 C 0.44 10.21 7.86 -10.99 -0.09 10.13 16 11 O -0.58 -15.51 16.08 -14.12 -0.23 -15.74 16 12 C 0.06 1.14 5.95 36.01 0.21 1.35 16 13 O -0.32 -5.65 9.00 -47.32 -0.43 -6.07 16 14 C 0.51 7.71 7.89 34.46 0.27 7.98 16 15 O -0.49 -7.97 14.95 -26.60 -0.40 -8.37 16 16 C -0.11 -1.33 5.88 -104.87 -0.62 -1.95 16 17 C -0.07 -0.81 9.59 -39.10 -0.37 -1.19 16 18 C 0.09 0.91 7.28 -39.50 -0.29 0.63 16 19 F -0.12 -1.28 17.26 2.25 0.04 -1.24 16 20 C -0.10 -0.81 9.79 -39.44 -0.39 -1.20 16 21 C -0.06 -0.50 6.33 -39.41 -0.25 -0.75 16 22 Cl -0.04 -0.28 28.50 -51.86 -1.48 -1.76 16 23 C 0.17 1.86 6.71 -38.67 -0.26 1.60 16 24 O -0.46 -4.88 11.03 -40.71 -0.45 -5.33 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.40 9.24 7.90 -40.82 -0.32 8.91 16 27 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.17 2.01 7.61 -52.49 -0.40 1.61 16 30 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.40 2.68 9.06 45.56 0.41 3.10 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -31.93 312.86 -5.68 -37.61 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.09 Total: 8.62 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -2.02 Total: 8.83 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.67 Total: -36.66 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -1.50 Total: -35.51 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.48 Total: -1.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.93 -5.68 -37.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751734529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.286 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds