Wall clock time and date at job start Tue Mar 31 2020 12:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46743 * 299.99663 * 3 2 1 6 6 H 1.48496 * 109.47216 * 59.99541 * 3 2 1 7 7 C 1.38946 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00302 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99771 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00591 * 179.97438 * 10 9 7 13 13 O 1.45191 * 109.47535 * 179.97438 * 12 10 9 14 14 C 1.34754 * 117.00123 * 179.97438 * 13 12 10 15 15 O 1.21502 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.47402 * 120.00006 * 179.97438 * 14 13 12 17 17 C 1.39808 * 120.18139 * 359.97438 * 16 14 13 18 18 C 1.37952 * 119.89791 * 180.02562 * 17 16 14 19 19 F 1.35105 * 119.86415 * 180.02562 * 18 17 16 20 20 C 1.38739 * 120.26470 * 0.02562 * 18 17 16 21 21 C 1.38129 * 120.36850 * 359.70148 * 20 18 17 22 22 Cl 1.73600 * 119.95385 * 180.27805 * 21 20 18 23 23 C 1.38801 * 120.09757 * 0.55653 * 21 20 18 24 24 O 1.35699 * 120.13608 * 179.74217 * 23 21 20 25 25 H 0.97001 * 119.99857 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99881 * 359.97438 * 9 7 2 27 27 H 1.09010 * 109.46719 * 59.99428 * 12 10 9 28 28 H 1.09000 * 109.46722 * 300.00422 * 12 10 9 29 29 H 1.08000 * 120.05029 * 0.02562 * 17 16 14 30 30 H 1.08000 * 119.81659 * 179.97438 * 20 18 17 31 31 H 0.96700 * 114.00288 * 269.72516 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8630 0.0011 13 8 2.1875 -5.9665 0.0004 14 6 1.6725 -7.2117 0.0013 15 8 0.4680 -7.3709 0.0022 16 6 2.5705 -8.3807 0.0001 17 6 3.9571 -8.2018 -0.0026 18 6 4.7920 -9.3000 -0.0043 19 9 6.1319 -9.1263 -0.0063 20 6 4.2614 -10.5819 -0.0038 21 6 2.8931 -10.7713 0.0045 22 17 2.2408 -12.3800 0.0122 23 6 2.0390 -9.6772 0.0008 24 8 0.6947 -9.8624 0.0037 25 1 -0.4850 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6169 -4.9208 -0.8887 28 1 0.6176 -4.9204 0.8913 29 1 4.3738 -7.2055 -0.0033 30 1 4.9217 -11.4364 -0.0056 31 1 0.3031 -9.9159 -0.8788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751734529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:04 Heat of formation + Delta-G solvation = -202.732352 kcal Electronic energy + Delta-G solvation = -22904.838332 eV Core-core repulsion = 18705.735040 eV Total energy + Delta-G solvation = -4199.103293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.10235 -42.01814 -40.68278 -39.86779 -37.98960 -37.60773 -37.35775 -36.03777 -33.43627 -32.88539 -30.68375 -30.01907 -26.83661 -25.69934 -24.03319 -22.46185 -21.45060 -20.08999 -19.85996 -19.52403 -18.63428 -17.93979 -17.82334 -17.57247 -17.04369 -16.97901 -16.58680 -16.39353 -15.96943 -15.77501 -15.69977 -15.02289 -14.82063 -14.54355 -14.01909 -13.85659 -13.63493 -13.56559 -13.24013 -12.95045 -12.48273 -12.47109 -12.41013 -12.16836 -12.10993 -11.91212 -11.58906 -11.57959 -10.52630 -10.40204 -10.12218 -9.81349 -8.53031 -6.03480 -0.86720 -0.40311 0.68624 1.12905 1.26118 1.34416 1.44205 1.58399 1.85996 2.08401 2.28553 2.74607 2.80305 2.98445 3.12761 3.39062 3.61904 3.66765 3.88112 4.09434 4.14654 4.21033 4.25591 4.43303 4.54385 4.73973 5.13613 5.25878 5.37100 5.88414 6.40697 6.50191 6.52664 7.02562 7.39252 7.92457 8.64176 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.002611 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.325724 B =10720.312746 C =11731.894152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.338 6.338 14 C 0.508 3.492 15 O -0.500 6.500 16 C -0.127 4.127 17 C -0.076 4.076 18 C 0.093 3.907 19 F -0.127 7.127 20 C -0.075 4.075 21 C -0.054 4.054 22 Cl -0.021 7.021 23 C 0.182 3.818 24 O -0.474 6.474 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.188 0.812 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -23.512 -1.804 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.102 0.898 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.004 4.004 13 O -0.253 6.253 14 C 0.353 3.647 15 O -0.389 6.389 16 C -0.129 4.129 17 C -0.095 4.095 18 C 0.074 3.926 19 F -0.105 7.105 20 C -0.094 4.094 21 C -0.082 4.082 22 Cl 0.008 6.992 23 C 0.134 3.866 24 O -0.288 6.288 25 H 0.090 0.910 26 H 0.235 0.765 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.173 0.827 30 H 0.205 0.795 31 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.684 -23.499 -1.219 23.818 hybrid contribution -0.321 1.015 -0.437 1.151 sum 3.363 -22.484 -1.656 22.794 Atomic orbital electron populations 1.69676 1.06933 1.29671 1.49241 1.26116 0.96573 1.02568 0.95686 0.84812 0.78096 0.76651 0.78429 1.19555 1.19440 1.19514 1.19745 0.92928 0.83340 1.50522 0.89758 1.41738 1.09596 1.04167 1.63988 1.20076 0.88082 0.85344 0.84154 1.90532 1.15405 1.87687 1.56749 1.22576 0.89996 0.82042 1.05748 1.86574 1.40521 1.14524 1.83687 1.20989 0.87223 0.83152 0.73357 1.90864 1.15871 1.86663 1.45544 1.19056 0.92541 0.90318 1.11034 1.21580 0.91588 1.00885 0.95467 1.17162 0.77747 0.93042 1.04698 1.91581 1.28918 1.96118 1.93913 1.21394 0.93817 0.97481 0.96742 1.20792 0.92718 0.87330 1.07340 1.98416 1.86015 1.18068 1.96671 1.18076 0.84946 0.88428 0.95123 1.84752 1.14716 1.93977 1.35372 0.90962 0.76511 0.87011 0.87370 0.82671 0.79516 0.72035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.10 13.05 21.66 0.28 -47.82 16 2 C -0.01 -0.45 5.50 84.92 0.47 0.02 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.34 -18.65 9.68 84.04 0.81 -17.83 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.09 5.29 -306.99 -1.62 -29.71 16 10 C 0.44 20.83 7.86 87.66 0.69 21.52 16 11 O -0.62 -34.33 16.08 15.71 0.25 -34.07 16 12 C 0.07 2.66 5.95 71.24 0.42 3.08 16 13 O -0.34 -12.02 9.00 -50.26 -0.45 -12.47 16 14 C 0.51 15.41 7.89 70.24 0.55 15.96 16 15 O -0.50 -16.10 14.95 26.84 0.40 -15.70 16 16 C -0.13 -3.06 5.88 -20.03 -0.12 -3.17 16 17 C -0.08 -1.69 9.59 22.58 0.22 -1.47 16 18 C 0.09 1.67 7.28 22.32 0.16 1.83 16 19 F -0.13 -2.45 17.26 44.97 0.78 -1.68 16 20 C -0.08 -1.01 9.79 22.36 0.22 -0.79 16 21 C -0.05 -0.84 6.33 22.38 0.14 -0.70 16 22 Cl -0.02 -0.28 28.50 -2.72 -0.08 -0.36 16 23 C 0.18 3.61 6.71 22.86 0.15 3.76 16 24 O -0.47 -9.31 11.03 -69.25 -0.76 -10.08 16 25 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 27 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 29 H 0.16 3.86 7.61 -2.91 -0.02 3.84 16 30 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.42 4.96 9.06 -74.06 -0.67 4.29 16 Total: -1.00 -68.60 312.86 4.39 -64.21 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.16 Total: 21.79 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 3.72 Total: 22.21 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.34 Total: -77.53 kcal Atomic # 8 Polarization: -71.76 SS G_CDS: -0.56 Total: -72.32 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -68.60 4.39 -64.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751734529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.521 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds