Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48498 * 109.47366 * 270.00143 * 3 2 1 5 5 H 1.48503 * 109.46854 * 29.99923 * 3 2 1 6 6 H 1.48500 * 109.47362 * 150.00096 * 3 2 1 7 7 C 1.37879 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47193 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.34702 * 117.00442 * 179.97438 * 11 10 9 13 13 O 1.21457 * 119.99593 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.00556 * 179.97438 * 12 11 10 15 15 N 1.32869 * 119.74539 * 0.27095 * 14 12 11 16 16 C 1.31489 * 121.64855 * 180.31121 * 15 14 12 17 17 Br 1.89098 * 119.52282 * 179.72737 * 16 15 14 18 18 C 1.38828 * 120.95650 * 359.70247 * 16 15 14 19 19 C 1.38406 * 119.39454 * 0.02562 * 18 16 15 20 20 C 1.38986 * 118.48326 * 0.02562 * 19 18 16 21 21 F 1.35104 * 120.49439 * 180.02562 * 20 19 18 22 22 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47301 * 59.99758 * 9 7 2 24 24 H 1.09002 * 109.47563 * 299.99819 * 9 7 2 25 25 H 1.09001 * 109.47448 * 59.99538 * 10 9 7 26 26 H 1.09002 * 109.46913 * 299.99890 * 10 9 7 27 27 H 1.08002 * 120.30124 * 180.02562 * 18 16 15 28 28 H 1.07997 * 120.75393 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0014 11 8 5.4735 -2.6365 -0.0002 12 6 6.0851 -3.8367 -0.0007 13 8 5.4236 -4.8553 -0.0016 14 6 7.5619 -3.9141 -0.0001 15 7 8.2806 -2.7966 0.0063 16 6 9.5953 -2.8218 0.0010 17 35 10.5584 -1.1945 0.0028 18 6 10.2864 -4.0258 -0.0055 19 6 9.5789 -5.2153 -0.0069 20 6 8.1901 -5.1604 -0.0022 21 9 7.4591 -6.2966 -0.0028 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6796 -0.8895 25 1 3.6585 -3.1494 -0.8920 26 1 3.6578 -3.1513 0.8879 27 1 11.3664 -4.0341 -0.0095 28 1 10.0942 -6.1644 -0.0123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795853365.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = -110.765111 kcal Electronic energy + Delta-G solvation = -17699.246757 eV Core-core repulsion = 14289.703777 eV Total energy + Delta-G solvation = -3409.542980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 316.985 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.34994 -41.99990 -40.89298 -37.90993 -35.44669 -34.17712 -33.72306 -32.76680 -30.92095 -27.76842 -26.24774 -24.59315 -23.01034 -22.47287 -19.81962 -19.09219 -18.95605 -18.37663 -17.94758 -17.73785 -17.03403 -16.49535 -16.25161 -15.50690 -15.34028 -15.02517 -14.98689 -14.49955 -14.45798 -13.81105 -13.41079 -13.20310 -12.59604 -12.54868 -12.08506 -12.00513 -11.84237 -11.62335 -11.58121 -11.52235 -11.34586 -11.08678 -10.83240 -10.20799 -8.36425 -6.44568 -1.06500 -0.44716 0.06740 1.00966 1.27642 1.36659 1.38068 1.51442 2.12964 2.32714 2.53626 2.73855 2.98181 3.26183 3.40544 3.66637 4.00446 4.10299 4.10478 4.39981 4.48574 4.56344 4.89897 5.02424 5.23637 5.29687 5.47406 5.95894 6.13150 6.44431 6.60836 7.20435 8.79412 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.003988 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.486836 B = 7018.804389 C = 8914.840820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.542 4.542 8 H 0.038 0.962 9 C -0.002 4.002 10 C 0.090 3.910 11 O -0.339 6.339 12 C 0.510 3.490 13 O -0.514 6.514 14 C 0.044 3.956 15 N -0.415 5.415 16 C 0.091 3.909 17 Br 0.022 6.978 18 C -0.052 4.052 19 C -0.082 4.082 20 C 0.124 3.876 21 F -0.109 7.109 22 H 0.271 0.729 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.214 0.786 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.782 -7.638 -0.024 33.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.171 1.171 7 C -0.580 4.580 8 H 0.057 0.943 9 C -0.039 4.039 10 C 0.017 3.983 11 O -0.254 6.254 12 C 0.353 3.647 13 O -0.403 6.403 14 C -0.094 4.094 15 N -0.128 5.128 16 C -0.130 4.130 17 Br 0.106 6.894 18 C -0.073 4.073 19 C -0.109 4.109 20 C 0.101 3.899 21 F -0.087 7.087 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.231 0.769 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 32.209 -6.454 -0.013 32.849 hybrid contribution -0.906 -0.605 -0.018 1.090 sum 31.302 -7.059 -0.031 32.088 Atomic orbital electron populations 1.70025 1.08181 1.28644 1.51229 1.25899 0.95664 1.03406 0.93400 0.85645 0.79483 0.77948 0.79580 1.18767 1.20296 1.17133 1.21071 0.90391 0.93955 1.52550 0.94322 1.19450 0.94351 0.91694 0.98431 1.23131 0.73179 1.00289 1.01671 1.86633 1.24942 1.31498 1.82358 1.21022 0.88463 0.82047 0.73132 1.90887 1.66459 1.36556 1.46355 1.20023 0.90635 0.89582 1.09122 1.67417 1.08325 1.29392 1.07657 1.23498 0.90373 0.95352 1.03804 1.96894 1.67640 1.27577 1.97264 1.22796 1.04687 0.88169 0.91684 1.22272 0.88639 1.03094 0.96866 1.18964 0.91691 0.80959 0.98277 1.91648 1.77545 1.47095 1.92388 0.91975 0.94793 0.94897 0.91800 0.91840 0.76877 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.96 21.45 0.30 -58.89 15 2 C 0.01 0.87 5.47 84.66 0.46 1.33 15 3 Si 0.95 44.69 27.47 68.60 1.88 46.57 15 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 15 7 C -0.54 -32.10 9.66 25.60 0.25 -31.86 15 8 H 0.04 2.50 7.99 -2.91 -0.02 2.47 15 9 C 0.00 -0.09 4.42 29.85 0.13 0.04 15 10 C 0.09 4.09 5.41 71.98 0.39 4.48 15 11 O -0.34 -14.12 10.04 -56.11 -0.56 -14.69 15 12 C 0.51 19.15 7.94 70.38 0.56 19.71 15 13 O -0.51 -21.16 15.10 19.97 0.30 -20.86 15 14 C 0.04 1.28 6.75 41.86 0.28 1.56 15 15 N -0.42 -11.33 10.08 -179.80 -1.81 -13.14 15 16 C 0.09 1.65 7.16 84.89 0.61 2.26 15 17 Br 0.02 0.36 33.86 -20.37 -0.69 -0.33 15 18 C -0.05 -0.44 9.83 22.45 0.22 -0.22 15 19 C -0.08 -0.75 10.16 22.49 0.23 -0.52 15 20 C 0.12 2.60 7.32 22.77 0.17 2.77 15 21 F -0.11 -2.71 15.55 44.97 0.70 -2.01 15 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 23 H 0.03 1.66 7.20 -2.39 -0.02 1.64 15 24 H 0.03 1.59 7.57 -2.39 -0.02 1.57 15 25 H 0.06 2.90 8.14 -2.39 -0.02 2.88 15 26 H 0.06 2.89 8.14 -2.39 -0.02 2.87 15 27 H 0.21 -0.28 8.06 -2.91 -0.02 -0.30 15 28 H 0.22 -0.13 8.06 -2.91 -0.02 -0.16 15 Total: -1.00 -75.74 284.39 4.57 -71.17 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: 1.15 Total: -7.38 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 3.30 Total: -0.44 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.51 Total: -72.04 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.26 Total: -35.54 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.70 Total: -2.01 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 35 Polarization: 0.36 SS G_CDS: -0.69 Total: -0.33 kcal Total: -75.74 4.57 -71.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795853365.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.596 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds