Wall clock time and date at job start Tue Mar 31 2020 11:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99461 * 2 1 4 4 H 1.48497 * 109.46906 * 239.99966 * 3 2 1 5 5 H 1.48491 * 109.47631 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46612 * 120.00852 * 3 2 1 7 7 C 1.38797 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99452 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00205 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46823 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47067 * 179.97438 * 12 11 10 14 14 C 1.34798 * 117.00191 * 179.97438 * 13 12 11 15 15 O 1.21552 * 119.99959 * 359.97438 * 14 13 12 16 16 C 1.47035 * 119.99870 * 179.97438 * 14 13 12 17 17 C 1.36103 * 123.47775 * 0.24897 * 16 14 13 18 18 S 1.70451 * 110.80622 * 180.25185 * 17 16 14 19 19 C 1.75498 * 92.45430 * 359.72183 * 18 17 16 20 20 N 1.48032 * 124.70131 * 180.02562 * 19 18 17 21 21 O 1.21799 * 120.00130 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99498 * 359.97438 * 20 19 18 23 23 C 1.32742 * 110.60127 * 359.97438 * 19 18 17 24 24 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47513 * 60.00019 * 10 9 7 26 26 H 1.09004 * 109.47109 * 300.00078 * 10 9 7 27 27 H 1.08997 * 109.47195 * 59.99515 * 11 10 9 28 28 H 1.08998 * 109.46825 * 299.99424 * 11 10 9 29 29 H 1.08997 * 109.47790 * 59.99685 * 12 11 10 30 30 H 1.09003 * 109.47488 * 299.99263 * 12 11 10 31 31 H 1.07998 * 124.59463 * 359.93933 * 17 16 14 32 32 H 1.08002 * 123.45319 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1516 -6.3076 -0.0005 13 8 2.6425 -7.6674 -0.0005 14 6 3.5527 -8.6616 -0.0005 15 8 4.7396 -8.3991 -0.0010 16 6 3.1099 -10.0637 0.0000 17 6 1.8013 -10.4377 -0.0044 18 16 1.6569 -12.1361 0.0048 19 6 3.3977 -12.3594 0.0064 20 7 4.0787 -13.6738 0.0131 21 8 5.2954 -13.7293 0.0132 22 8 3.4221 -14.6997 0.0185 23 6 4.0191 -11.1865 -0.0004 24 1 -0.4850 0.8400 0.0004 25 1 3.1246 -3.7313 0.8894 26 1 3.1246 -3.7312 -0.8905 27 1 1.3711 -5.4840 -0.8913 28 1 1.3707 -5.4846 0.8886 29 1 3.7597 -6.1477 0.8898 30 1 3.7608 -6.1474 -0.8901 31 1 0.9674 -9.7514 -0.0077 32 1 5.0940 -11.0822 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805409107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:54 Heat of formation + Delta-G solvation = -64.827916 kcal Electronic energy + Delta-G solvation = -19828.756573 eV Core-core repulsion = 16203.890148 eV Total energy + Delta-G solvation = -3624.866425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.56693 -40.84059 -38.38356 -37.04227 -36.77804 -33.70565 -32.50914 -31.86620 -27.33951 -27.11632 -25.76276 -25.14450 -22.56466 -21.50201 -20.53569 -20.26009 -18.85907 -18.21572 -18.11696 -17.51679 -16.99800 -16.88153 -16.73953 -14.97749 -14.88279 -14.79495 -14.23087 -13.99306 -13.94839 -13.50933 -12.90937 -12.89862 -12.30206 -12.18210 -12.12526 -11.87892 -11.66658 -11.49666 -11.29144 -11.07489 -11.06693 -10.90697 -10.72864 -10.48951 -10.42837 -9.73110 -9.58474 -9.13135 -8.45221 -6.64594 -6.31103 -4.03023 -0.92500 -0.18226 0.16761 0.59723 0.94463 1.04132 2.22293 2.40357 3.15908 3.18466 3.23158 3.44033 3.80822 4.07006 4.13732 4.18820 4.54355 4.73401 4.94874 4.97219 5.00339 5.05529 5.27430 5.33501 5.63784 5.67438 5.73377 5.97072 6.18517 6.31647 6.53415 7.04171 7.32892 7.52552 8.28129 9.15306 10.76932 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.001850 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.339254 B =15128.211129 C =15693.782511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.349 6.349 14 C 0.529 3.471 15 O -0.495 6.495 16 C -0.153 4.153 17 C -0.148 4.148 18 S 0.350 5.650 19 C -0.207 4.207 20 N 0.060 4.940 21 O -0.138 6.138 22 O -0.150 6.150 23 C 0.019 3.981 24 H 0.269 0.731 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.207 0.793 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 -25.037 -0.008 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.265 6.265 14 C 0.370 3.630 15 O -0.384 6.384 16 C -0.169 4.169 17 C -0.288 4.288 18 S 0.617 5.383 19 C -0.407 4.407 20 N 0.583 4.417 21 O -0.357 6.357 22 O -0.366 6.366 23 C -0.014 4.014 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.224 0.776 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.109 -25.371 -0.006 25.371 hybrid contribution 3.409 2.203 -0.005 4.059 sum 3.300 -23.168 -0.011 23.402 Atomic orbital electron populations 1.70000 1.05932 1.27605 1.46923 1.25022 0.95113 0.99156 0.94438 0.86196 0.79232 0.81042 0.78918 1.19876 1.20761 1.19882 1.22647 0.94562 0.90617 1.58986 0.90849 1.84635 1.08634 0.99276 1.96911 1.23183 1.03588 0.96178 1.03465 1.21303 0.96318 0.91605 1.04389 1.23407 0.98069 0.75486 1.03084 1.86495 1.39334 1.17126 1.83557 1.19914 0.84296 0.85175 0.73608 1.90913 1.17625 1.84695 1.45147 1.19079 0.91692 0.91758 1.14347 1.26711 1.01916 1.02705 0.97446 1.83688 0.94251 0.95759 1.64630 1.25889 1.00134 0.88029 1.26626 1.42458 1.00862 1.00775 0.97616 1.94614 0.94724 1.93297 1.53036 1.94597 1.66141 1.22040 1.53838 1.21275 1.03395 0.87683 0.89053 0.92140 0.91638 0.91643 0.90243 0.90253 0.90713 0.90707 0.77572 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.29 13.22 55.49 0.73 -24.55 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.45 9.50 30.94 0.29 -14.16 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.12 -3.06 21.44 -107.50 -2.30 -5.36 16 10 C -0.12 -2.16 5.67 37.16 0.21 -1.94 16 11 C -0.10 -1.42 5.60 -26.73 -0.15 -1.57 16 12 C 0.07 0.93 5.48 37.16 0.20 1.14 16 13 O -0.35 -3.97 9.87 -40.76 -0.40 -4.37 16 14 C 0.53 5.89 7.92 34.30 0.27 6.17 16 15 O -0.50 -6.89 16.59 -19.31 -0.32 -7.21 16 16 C -0.15 -1.24 5.98 -104.65 -0.63 -1.87 16 17 C -0.15 -0.77 10.56 29.97 0.32 -0.46 16 18 S 0.35 1.65 22.78 -107.50 -2.45 -0.80 16 19 C -0.21 -1.63 7.44 -11.50 -0.09 -1.72 16 20 N 0.06 0.61 4.45 33.26 0.15 0.76 16 21 O -0.14 -1.53 18.91 -29.46 -0.56 -2.09 16 22 O -0.15 -1.57 19.05 -29.46 -0.56 -2.13 16 23 C 0.02 0.16 9.69 -39.01 -0.38 -0.22 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 26 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.21 0.65 8.02 -52.49 -0.42 0.23 16 32 H 0.18 1.43 8.01 -52.49 -0.42 1.01 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -32.40 331.50 -8.70 -41.10 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -2.92 Total: -3.61 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.04 Total: -12.73 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.88 Total: -23.80 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.84 Total: -15.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -4.75 Total: -6.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.40 -8.70 -41.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805409107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.727 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds