Wall clock time and date at job start Tue Mar 31 2020 11:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99461 * 2 1 4 4 H 1.48497 * 109.46906 * 239.99966 * 3 2 1 5 5 H 1.48491 * 109.47631 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46612 * 120.00852 * 3 2 1 7 7 C 1.38797 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99452 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00205 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46823 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47067 * 179.97438 * 12 11 10 14 14 C 1.34798 * 117.00191 * 179.97438 * 13 12 11 15 15 O 1.21552 * 119.99959 * 359.97438 * 14 13 12 16 16 C 1.47035 * 119.99870 * 179.97438 * 14 13 12 17 17 C 1.36103 * 123.47775 * 0.24897 * 16 14 13 18 18 S 1.70451 * 110.80622 * 180.25185 * 17 16 14 19 19 C 1.75498 * 92.45430 * 359.72183 * 18 17 16 20 20 N 1.48032 * 124.70131 * 180.02562 * 19 18 17 21 21 O 1.21799 * 120.00130 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99498 * 359.97438 * 20 19 18 23 23 C 1.32742 * 110.60127 * 359.97438 * 19 18 17 24 24 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47513 * 60.00019 * 10 9 7 26 26 H 1.09004 * 109.47109 * 300.00078 * 10 9 7 27 27 H 1.08997 * 109.47195 * 59.99515 * 11 10 9 28 28 H 1.08998 * 109.46825 * 299.99424 * 11 10 9 29 29 H 1.08997 * 109.47790 * 59.99685 * 12 11 10 30 30 H 1.09003 * 109.47488 * 299.99263 * 12 11 10 31 31 H 1.07998 * 124.59463 * 359.93933 * 17 16 14 32 32 H 1.08002 * 123.45319 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1516 -6.3076 -0.0005 13 8 2.6425 -7.6674 -0.0005 14 6 3.5527 -8.6616 -0.0005 15 8 4.7396 -8.3991 -0.0010 16 6 3.1099 -10.0637 0.0000 17 6 1.8013 -10.4377 -0.0044 18 16 1.6569 -12.1361 0.0048 19 6 3.3977 -12.3594 0.0064 20 7 4.0787 -13.6738 0.0131 21 8 5.2954 -13.7293 0.0132 22 8 3.4221 -14.6997 0.0185 23 6 4.0191 -11.1865 -0.0004 24 1 -0.4850 0.8400 0.0004 25 1 3.1246 -3.7313 0.8894 26 1 3.1246 -3.7312 -0.8905 27 1 1.3711 -5.4840 -0.8913 28 1 1.3707 -5.4846 0.8886 29 1 3.7597 -6.1477 0.8898 30 1 3.7608 -6.1474 -0.8901 31 1 0.9674 -9.7514 -0.0077 32 1 5.0940 -11.0822 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805409107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:53 Heat of formation + Delta-G solvation = -82.546356 kcal Electronic energy + Delta-G solvation = -19829.524902 eV Core-core repulsion = 16203.890148 eV Total energy + Delta-G solvation = -3625.634754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.027 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.29916 -41.70866 -39.05738 -37.83941 -37.68274 -34.94849 -34.58879 -32.51178 -28.47439 -27.84574 -27.61987 -26.14728 -23.36428 -22.70696 -21.23425 -20.97988 -19.59059 -19.53326 -18.93134 -18.84123 -17.84268 -17.81079 -17.41264 -16.90029 -16.21624 -16.09377 -15.24092 -14.77981 -14.74002 -14.51659 -14.17440 -14.01404 -13.82979 -13.16616 -12.94517 -12.92134 -12.81821 -12.65878 -12.63518 -12.47456 -12.43662 -12.41810 -11.87289 -11.56572 -11.49819 -11.14575 -10.99681 -10.37029 -10.06209 -8.68012 -8.38796 -6.14846 -1.55497 -0.70576 -0.50731 0.05567 0.32997 0.34028 1.23079 1.37902 1.40480 1.48721 1.63168 1.79835 2.26586 2.95877 3.25138 3.28180 3.40822 3.56449 3.84477 3.86849 3.94991 4.13619 4.27581 4.32030 4.36510 4.54988 4.68307 4.92978 5.01656 5.05547 5.29575 5.39336 6.16817 6.23596 6.45454 7.04038 8.70021 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.001850 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.339254 B =15128.211129 C =15693.782511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.182 6.182 10 C -0.094 4.094 11 C -0.085 4.085 12 C 0.082 3.918 13 O -0.343 6.343 14 C 0.532 3.468 15 O -0.531 6.531 16 C -0.179 4.179 17 C -0.125 4.125 18 S 0.435 5.565 19 C -0.230 4.230 20 N 0.062 4.938 21 O -0.176 6.176 22 O -0.150 6.150 23 C 0.020 3.980 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -25.556 -0.011 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.690 4.690 8 H 0.092 0.908 9 S 0.047 5.953 10 C -0.243 4.243 11 C -0.124 4.124 12 C 0.007 3.993 13 O -0.259 6.259 14 C 0.376 3.624 15 O -0.422 6.422 16 C -0.194 4.194 17 C -0.265 4.265 18 S 0.702 5.298 19 C -0.430 4.430 20 N 0.580 4.420 21 O -0.388 6.388 22 O -0.368 6.368 23 C -0.014 4.014 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.772 -25.910 -0.009 25.921 hybrid contribution 3.496 2.226 -0.004 4.144 sum 2.723 -23.684 -0.014 23.840 Atomic orbital electron populations 1.70127 1.07568 1.28666 1.47799 1.26031 0.96037 1.03023 0.93766 0.85096 0.77964 0.76257 0.79308 1.19015 1.20009 1.19025 1.23028 0.94851 0.92054 1.59047 0.90816 1.84569 1.12980 1.00692 1.97065 1.23083 1.00849 0.96686 1.03686 1.21109 0.96924 0.89491 1.04827 1.23129 0.96863 0.75974 1.03378 1.86464 1.39205 1.16598 1.83675 1.20325 0.83753 0.85953 0.72358 1.90900 1.18995 1.85203 1.47081 1.18748 0.92800 0.89869 1.17960 1.27118 1.01435 1.04082 0.93868 1.83578 0.90540 0.93994 1.61709 1.26038 1.02228 0.86571 1.28167 1.42686 1.00770 1.01509 0.97049 1.94616 0.95498 1.93773 1.54866 1.94566 1.65915 1.23030 1.53332 1.21225 1.03380 0.87965 0.88809 0.91908 0.91370 0.91372 0.89836 0.89849 0.90525 0.90517 0.74919 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.12 13.22 21.65 0.29 -52.83 16 2 C 0.02 0.93 5.49 84.86 0.47 1.39 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.54 -30.26 9.50 67.95 0.65 -29.62 16 8 H 0.07 3.96 7.80 -2.91 -0.02 3.93 16 9 S -0.18 -9.13 21.44 -56.49 -1.21 -10.34 16 10 C -0.09 -3.44 5.67 71.98 0.41 -3.03 16 11 C -0.09 -2.34 5.60 30.59 0.17 -2.17 16 12 C 0.08 1.92 5.48 71.98 0.39 2.32 16 13 O -0.34 -7.12 9.87 -57.09 -0.56 -7.69 16 14 C 0.53 11.23 7.92 70.13 0.56 11.78 16 15 O -0.53 -14.68 16.59 19.67 0.33 -14.35 16 16 C -0.18 -2.57 5.98 -19.88 -0.12 -2.69 16 17 C -0.12 -0.87 10.56 67.32 0.71 -0.16 16 18 S 0.44 2.61 22.78 -56.49 -1.29 1.32 16 19 C -0.23 -3.31 7.44 80.75 0.60 -2.71 16 20 N 0.06 1.22 4.45 -48.69 -0.22 1.00 16 21 O -0.18 -4.07 18.91 18.89 0.36 -3.71 16 22 O -0.15 -2.99 19.05 18.88 0.36 -2.63 16 23 C 0.02 0.31 9.69 22.68 0.22 0.53 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.07 2.45 8.14 -2.40 -0.02 2.43 16 26 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.23 0.36 8.02 -2.91 -0.02 0.34 16 32 H 0.18 2.88 8.01 -2.91 -0.02 2.85 16 Total: -1.00 -71.31 331.50 5.30 -66.02 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.16 Total: 2.72 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.05 Total: -24.36 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.07 Total: -51.83 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: 0.48 Total: -28.38 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -6.52 SS G_CDS: -2.50 Total: -9.02 kcal Total: -71.31 5.30 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805409107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.531 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds