Wall clock time and date at job start Tue Mar 31 2020 12:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28675 * 126.01878 * 2 1 4 4 N 1.28459 * 110.93359 * 179.97438 * 3 2 1 5 5 C 1.33396 * 109.52983 * 359.73214 * 4 3 2 6 6 Br 1.89098 * 126.92229 * 180.27392 * 5 4 3 7 7 C 1.37212 * 126.01262 * 179.97438 * 2 1 3 8 8 C 1.46966 * 127.29430 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99591 * 180.02562 * 8 7 2 10 10 O 1.34814 * 120.00264 * 0.02562 * 8 7 2 11 11 C 1.45201 * 117.00060 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47189 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46905 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46949 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00178 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99618 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00115 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46946 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46943 * 120.00214 * 18 16 14 21 21 H 1.48499 * 109.47250 * 240.00124 * 18 16 14 22 22 H 1.09004 * 109.47180 * 270.01861 * 1 2 3 23 23 H 1.09002 * 109.46994 * 30.01848 * 1 2 3 24 24 H 1.09000 * 109.47743 * 150.02185 * 1 2 3 25 25 H 1.08997 * 109.47164 * 300.00311 * 11 10 8 26 26 H 1.08998 * 109.47098 * 60.00238 * 11 10 8 27 27 H 1.09000 * 109.46868 * 300.00547 * 12 11 10 28 28 H 1.08998 * 109.47093 * 60.00006 * 12 11 10 29 29 H 1.09005 * 109.46781 * 299.99493 * 13 12 11 30 30 H 1.08998 * 109.47611 * 59.99869 * 13 12 11 31 31 H 0.96999 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2217 1.0408 0.0000 4 7 3.4620 0.7064 0.0005 5 6 3.5654 -0.6235 0.0068 6 35 5.1606 -1.6389 0.0175 7 6 2.2718 -1.1099 0.0005 8 6 1.8496 -2.5176 0.0006 9 8 2.6834 -3.4021 0.0015 10 8 0.5377 -2.8280 -0.0003 11 6 0.1940 -4.2387 -0.0007 12 6 -1.3282 -4.3928 -0.0025 13 6 -1.6903 -5.8794 -0.0022 14 6 -3.1896 -6.0312 -0.0046 15 1 -3.8211 -5.1550 -0.0056 16 6 -3.7553 -7.2886 -0.0053 17 7 -2.9863 -8.3555 -0.0035 18 14 -5.6138 -7.4767 -0.0075 19 1 -6.2472 -6.1336 -0.0075 20 1 -6.0343 -8.2230 -1.2205 21 1 -6.0372 -8.2231 1.2045 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5135 25 1 0.6079 -4.7132 -0.8904 26 1 0.6066 -4.7134 0.8895 27 1 -1.7424 -3.9181 0.8870 28 1 -1.7405 -3.9182 -0.8929 29 1 -1.2760 -6.3543 -0.8916 30 1 -1.2781 -6.3537 0.8884 31 1 -3.3842 -9.2401 -0.0037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810584837.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:22 Heat of formation + Delta-G solvation = 7.281964 kcal Electronic energy + Delta-G solvation = -18052.980515 eV Core-core repulsion = 14804.309497 eV Total energy + Delta-G solvation = -3248.671018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.016 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.75993 -40.32035 -36.83251 -35.31333 -34.12739 -32.79899 -31.83277 -30.54221 -28.47335 -27.39389 -24.94360 -23.10176 -22.62379 -21.21177 -20.48578 -18.42079 -17.49471 -17.16886 -16.71526 -16.33906 -16.18445 -14.75884 -14.54832 -14.23974 -13.99378 -13.86445 -13.24335 -12.67133 -12.40120 -12.28397 -12.06828 -11.84903 -11.73351 -11.18073 -11.09535 -10.82501 -10.66645 -10.63772 -10.54529 -10.33070 -9.91193 -9.65596 -9.60591 -9.26387 -8.48324 -6.12722 -4.16447 0.23511 0.77258 1.64309 1.76706 2.31249 2.43863 3.23634 3.31661 3.34654 3.75091 4.09357 4.34175 4.49343 4.69654 4.75505 5.00192 5.15003 5.23581 5.37259 5.37884 5.74771 5.82193 6.10503 6.34573 6.56683 6.79951 7.42699 7.48608 7.58006 7.71709 7.84576 8.24267 8.89798 9.48612 10.98604 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.002867 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.036132 B = 9764.329221 C =10750.304111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.249 5.249 3 N -0.040 5.040 4 N -0.244 5.244 5 C 0.041 3.959 6 Br 0.076 6.924 7 C -0.020 4.020 8 C 0.534 3.466 9 O -0.463 6.463 10 O -0.356 6.356 11 C 0.069 3.931 12 C -0.109 4.109 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.106 0.894 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 16.873 -0.014 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.047 5.047 3 N -0.022 5.022 4 N -0.108 5.108 5 C -0.179 4.179 6 Br 0.158 6.842 7 C -0.155 4.155 8 C 0.374 3.626 9 O -0.346 6.346 10 O -0.273 6.273 11 C -0.003 4.003 12 C -0.146 4.146 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.531 5.531 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.124 0.876 23 H 0.130 0.870 24 H 0.140 0.860 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.429 17.516 -0.014 22.072 hybrid contribution -1.492 -1.198 0.020 1.914 sum 11.937 16.318 0.007 20.218 Atomic orbital electron populations 1.22803 0.69946 1.07567 1.06685 1.47876 1.10407 1.03345 1.43072 1.78247 0.96009 1.11317 1.16627 1.75093 1.09265 1.09878 1.16551 1.23990 0.93055 0.92770 1.08120 1.96873 1.23834 1.66237 1.97295 1.21241 0.90230 0.88240 1.15824 1.19138 0.82605 0.85914 0.74969 1.90984 1.53000 1.47011 1.43645 1.86519 1.23890 1.33459 1.83441 1.23715 0.99210 0.74454 1.02937 1.21809 0.88725 1.02086 1.02015 1.19061 0.96910 0.87516 0.97860 1.21170 0.91415 0.92281 1.51320 0.92379 1.25030 0.98325 0.95976 0.95087 1.69966 1.34966 0.97923 1.50287 0.86493 0.85365 0.78203 0.77688 1.19678 1.20925 1.20931 0.87598 0.87046 0.85973 0.90816 0.90800 0.92004 0.92026 0.96111 0.96105 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.92 59.85 0.65 1.12 16 2 N -0.25 -2.71 3.80 -63.84 -0.24 -2.95 16 3 N -0.04 -0.49 13.12 60.35 0.79 0.30 16 4 N -0.24 -3.32 12.34 31.98 0.39 -2.93 16 5 C 0.04 0.55 7.83 -16.88 -0.13 0.42 16 6 Br 0.08 0.91 32.64 -68.01 -2.22 -1.31 16 7 C -0.02 -0.26 7.02 -81.94 -0.58 -0.84 16 8 C 0.53 7.49 7.94 34.27 0.27 7.76 16 9 O -0.46 -7.39 15.35 -19.30 -0.30 -7.69 16 10 O -0.36 -4.84 7.87 -40.80 -0.32 -5.17 16 11 C 0.07 1.08 5.48 37.16 0.20 1.29 16 12 C -0.11 -1.96 5.53 -26.73 -0.15 -2.11 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -13.91 9.11 -34.44 -0.31 -14.23 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 18 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.12 0.87 6.31 -51.93 -0.33 0.54 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -30.44 301.00 -5.17 -35.61 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -3.25 Total: -6.34 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.28 Total: -4.68 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 1.68 Total: -30.63 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.62 Total: -12.85 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 35 Polarization: 0.91 SS G_CDS: -2.22 Total: -1.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.44 -5.17 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810584837.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.894 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds