Wall clock time and date at job start Tue Mar 31 2020 12:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99485 * 3 2 1 5 5 H 1.48492 * 109.47096 * 29.99747 * 3 2 1 6 6 H 1.48506 * 109.46749 * 149.99744 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 S 1.65595 * 119.99670 * 179.72791 * 13 11 10 15 15 O 1.42098 * 106.40331 * 178.53758 * 14 13 11 16 16 O 1.42104 * 106.40251 * 311.45346 * 14 13 11 17 17 C 1.76199 * 107.22343 * 64.99630 * 14 13 11 18 18 C 1.38266 * 119.99173 * 269.72761 * 17 14 13 19 19 C 1.38225 * 120.02175 * 179.76437 * 18 17 14 20 20 C 1.38230 * 120.01551 * 0.50544 * 19 18 17 21 21 C 1.38333 * 119.98870 * 359.74660 * 20 19 18 22 22 Cl 1.73598 * 120.01668 * 180.02562 * 21 20 19 23 23 C 1.38191 * 119.99329 * 89.99801 * 17 14 13 24 24 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 26 26 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.08001 * 119.98842 * 359.97438 * 18 17 14 31 31 H 1.08006 * 119.98993 * 180.25119 * 19 18 17 32 32 H 1.07997 * 120.00721 * 179.76802 * 20 19 18 33 33 H 1.07996 * 120.00826 * 359.95544 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 16 1.3375 -7.5684 0.0116 15 8 2.3170 -8.5975 -0.0181 16 8 0.3549 -7.4601 1.0324 17 6 0.4613 -7.6714 -1.5136 18 6 -0.8246 -7.1719 -1.6070 19 6 -1.5108 -7.2480 -2.8045 20 6 -0.9157 -7.8329 -3.9065 21 6 0.3689 -8.3375 -3.8123 22 17 1.1172 -9.0717 -5.1960 23 6 1.0573 -8.2564 -2.6146 24 1 -0.4850 0.8402 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 3.1355 -6.1343 0.0057 30 1 -1.2918 -6.7191 -0.7450 31 1 -2.5138 -6.8540 -2.8780 32 1 -1.4533 -7.8957 -4.8411 33 1 2.0603 -8.6498 -2.5405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813056516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:49 Heat of formation + Delta-G solvation = -101.232978 kcal Electronic energy + Delta-G solvation = -21613.724762 eV Core-core repulsion = 17985.235988 eV Total energy + Delta-G solvation = -3628.488774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80734 -39.50961 -37.38031 -36.79361 -36.06229 -34.32393 -33.64351 -31.73631 -31.13591 -31.04169 -26.08817 -23.74800 -23.11925 -22.66771 -20.42009 -19.82984 -18.63073 -17.82414 -17.27992 -16.41977 -16.21507 -15.86391 -15.53388 -15.07566 -14.85623 -14.54420 -14.12317 -14.05975 -13.86586 -12.90049 -12.77179 -12.64227 -12.28645 -12.23300 -12.19838 -11.98441 -11.91405 -11.57655 -11.34402 -11.06931 -11.00419 -10.68652 -10.63835 -10.12281 -10.05117 -9.78701 -9.52414 -9.21179 -9.13071 -8.41675 -6.05562 -4.10557 -0.00025 0.44001 0.81931 1.73362 2.37588 2.65614 3.09452 3.28123 3.35049 3.37089 3.50769 4.11128 4.38320 4.41706 4.55879 4.79181 4.81858 4.99158 5.10062 5.20440 5.30180 5.37905 5.61714 5.77454 5.91640 5.97188 5.98754 6.33387 6.52812 6.84648 7.61064 7.69045 7.80848 7.93578 8.28911 8.96514 9.53914 11.05204 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.003507 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.533878 B = 7981.615067 C = 8746.898197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.131 4.131 11 C 0.530 3.470 12 O -0.485 6.485 13 N -1.057 6.057 14 S 2.680 3.320 15 O -0.951 6.951 16 O -0.926 6.926 17 C -0.665 4.665 18 C 0.010 3.990 19 C -0.128 4.128 20 C -0.052 4.052 21 C -0.063 4.063 22 Cl -0.063 7.063 23 C -0.013 4.013 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.434 0.566 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -17.842 -7.325 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.173 4.173 11 C 0.319 3.681 12 O -0.355 6.355 13 N -0.824 5.824 14 S 2.771 3.229 15 O -0.941 6.941 16 O -0.917 6.917 17 C -0.753 4.753 18 C -0.010 4.010 19 C -0.147 4.147 20 C -0.071 4.071 21 C -0.091 4.091 22 Cl -0.035 7.035 23 C -0.033 4.033 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.270 0.730 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.156 -18.374 -6.778 19.618 hybrid contribution 0.838 1.061 -0.944 1.648 sum 1.994 -17.313 -7.722 19.062 Atomic orbital electron populations 1.69985 1.06070 1.26767 1.49833 1.25011 0.94839 0.99297 0.95107 0.86572 0.79795 0.83372 0.78095 1.20659 1.21184 1.19823 1.21162 0.92998 0.90777 1.51915 0.92425 1.18996 0.93179 0.89335 0.98998 1.22073 1.01069 0.90457 1.03682 1.21760 0.88620 0.85926 0.71829 1.90804 1.13521 1.86733 1.44444 1.55196 1.21730 1.23529 1.81987 1.02563 0.73727 0.72522 0.74106 1.93620 1.59981 1.53455 1.87059 1.93652 1.60108 1.85051 1.52851 1.30749 1.09071 1.14632 1.20810 1.21310 0.91217 0.89348 0.99077 1.21372 1.01306 0.99822 0.92160 1.21433 0.92619 0.93348 0.99722 1.20925 0.95199 1.03447 0.89488 1.98382 1.82076 1.81396 1.41598 1.20785 0.99686 0.93065 0.89724 0.92839 0.95567 0.95344 0.88879 0.88999 0.72985 0.82417 0.83669 0.84054 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.80 4.26 -27.88 -0.12 0.69 16 10 C -0.13 -2.31 5.64 -27.88 -0.16 -2.47 16 11 C 0.53 8.75 7.66 -10.98 -0.08 8.67 16 12 O -0.48 -9.58 13.21 -11.51 -0.15 -9.73 16 13 N -1.06 -12.98 5.70 31.22 0.18 -12.80 16 14 S 2.68 36.06 5.40 -107.50 -0.58 35.48 16 15 O -0.95 -13.11 17.28 -57.17 -0.99 -14.10 16 16 O -0.93 -15.69 16.22 -64.61 -1.05 -16.74 16 17 C -0.67 -8.55 5.74 -39.59 -0.23 -8.78 16 18 C 0.01 0.13 8.53 -39.58 -0.34 -0.21 16 19 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 20 C -0.05 -0.52 9.83 -39.55 -0.39 -0.91 16 21 C -0.06 -0.68 6.32 -39.49 -0.25 -0.93 16 22 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.12 16 23 C -0.01 -0.15 9.31 -39.55 -0.37 -0.51 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.09 1.47 8.14 -51.92 -0.42 1.04 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.43 3.54 8.83 -34.47 -0.30 3.24 16 30 H 0.16 2.20 6.87 -52.49 -0.36 1.84 16 31 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.46 7.62 -52.49 -0.40 1.06 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -34.42 320.79 -9.42 -43.84 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.14 Total: 0.06 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.74 Total: -19.11 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.91 Total: -38.22 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.19 Total: -40.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 36.06 SS G_CDS: -0.58 Total: 35.48 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.42 -9.42 -43.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813056516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.391 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds