Wall clock time and date at job start Tue Mar 31 2020 11:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 S 1.65593 * 120.00245 * 164.99838 * 10 9 7 12 12 O 1.42095 * 106.40441 * 178.54314 * 11 10 9 13 13 O 1.42107 * 106.40414 * 311.46258 * 11 10 9 14 14 C 1.76199 * 107.21807 * 65.00204 * 11 10 9 15 15 C 1.35440 * 120.01805 * 114.72761 * 14 11 10 16 16 C 1.39947 * 122.62695 * 179.70858 * 15 14 11 17 17 C 1.35879 * 121.84097 * 0.57196 * 16 15 14 18 18 Cl 1.73598 * 120.63326 * 179.70324 * 17 16 15 19 19 C 1.45324 * 118.73366 * 359.73028 * 17 16 15 20 20 N 1.30811 * 138.84526 * 180.02562 * 19 17 16 21 21 O 1.21512 * 109.05895 * 179.97438 * 20 19 17 22 22 N 1.21497 * 116.28524 * 359.97438 * 21 20 19 23 23 C 1.31010 * 109.10259 * 0.02562 * 22 21 20 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 0.97000 * 119.99344 * 345.00166 * 10 9 7 28 28 H 1.07996 * 118.68980 * 359.97438 * 15 14 11 29 29 H 1.08005 * 119.08060 * 180.27579 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6882 -5.1422 0.3717 12 8 2.8237 -5.9880 0.2518 13 8 0.9251 -5.0302 1.5653 14 6 0.5646 -5.6355 -0.8927 15 6 0.8789 -6.6652 -1.7144 16 6 0.0254 -7.1061 -2.7321 17 6 -1.1756 -6.5154 -2.9665 18 17 -2.2066 -7.0832 -4.2425 19 6 -1.5804 -5.3989 -2.1289 20 7 -2.5911 -4.5783 -2.0024 21 8 -2.3686 -3.8132 -1.0849 22 7 -1.3109 -3.9609 -0.5057 23 6 -0.6578 -4.9562 -1.0527 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1349 -3.4540 -0.2169 28 1 1.8242 -7.1689 -1.5762 29 1 0.3319 -7.9361 -3.3515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814390998.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:10 Heat of formation + Delta-G solvation = 66.814200 kcal Electronic energy + Delta-G solvation = -22136.301230 eV Core-core repulsion = 18411.559185 eV Total energy + Delta-G solvation = -3724.742045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.007 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -46.65922 -38.99430 -37.09899 -36.95760 -35.56185 -34.91287 -34.58586 -33.40562 -32.19517 -31.32744 -26.80194 -26.08115 -25.12520 -22.59611 -22.19509 -19.81606 -18.93400 -18.78170 -18.31874 -17.44299 -17.14307 -16.35661 -15.98661 -15.65004 -15.02865 -14.60706 -13.92437 -13.62356 -13.52652 -13.29060 -12.79919 -12.66919 -12.38512 -12.21936 -11.94685 -11.83137 -11.77826 -11.67272 -11.49015 -11.44997 -10.99045 -10.88853 -10.73674 -10.20129 -10.14734 -9.43836 -9.11759 -8.90420 -8.28529 -6.16354 -4.22845 -0.56604 0.66039 0.88688 1.33940 1.60249 2.61517 2.82629 3.24024 3.28368 3.31566 3.34068 3.42082 3.71070 3.90798 4.28205 4.33613 4.38912 4.64579 4.81334 4.96610 5.19165 5.23513 5.30911 5.46307 5.86907 6.33243 7.23830 7.32129 7.69807 7.79346 8.13292 8.43005 8.80714 9.41911 10.92887 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.005122 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.793035 B = 5465.618437 C = 6572.875244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.247 3.753 10 N -1.095 6.095 11 S 2.687 3.313 12 O -0.970 6.970 13 O -0.941 6.941 14 C -0.614 4.614 15 C 0.038 3.962 16 C -0.106 4.106 17 C 0.063 3.937 18 Cl -0.025 7.025 19 C 0.001 3.999 20 N -0.326 5.326 21 O 0.398 5.602 22 N -0.290 5.290 23 C 0.072 3.928 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.047 0.953 27 H 0.413 0.587 28 H 0.172 0.828 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -14.758 -7.583 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.124 3.876 10 N -0.859 5.859 11 S 2.770 3.230 12 O -0.960 6.960 13 O -0.931 6.931 14 C -0.698 4.698 15 C 0.015 3.985 16 C -0.129 4.129 17 C 0.034 3.966 18 Cl 0.004 6.996 19 C -0.155 4.155 20 N -0.044 5.044 21 O 0.154 5.846 22 N -0.005 5.005 23 C -0.084 4.084 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.249 0.751 28 H 0.189 0.811 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.294 -14.393 -6.655 16.022 hybrid contribution 0.707 0.475 -1.285 1.542 sum -1.587 -13.919 -7.940 16.102 Atomic orbital electron populations 1.69969 1.05888 1.27209 1.48735 1.24968 0.94998 0.99332 0.94775 0.86389 0.79926 0.83043 0.77735 1.19649 1.20908 1.20718 1.21189 0.93407 0.89785 1.53047 0.91566 1.19218 0.87396 0.83213 0.97742 1.55471 1.19797 1.23407 1.87253 1.02308 0.73184 0.73268 0.74216 1.93542 1.48551 1.66931 1.87019 1.93628 1.72353 1.86016 1.41058 1.30284 1.10062 1.06676 1.22739 1.20881 0.98769 0.90571 0.88259 1.21092 0.91674 1.01034 0.99059 1.20764 0.92904 0.92244 0.90706 1.98426 1.66611 1.87152 1.47378 1.23461 0.92472 0.99601 0.99975 1.75195 1.20714 1.02581 1.05950 1.85532 1.28356 1.41508 1.29230 1.75766 0.94901 1.13948 1.15886 1.21670 0.97443 0.94615 0.94696 0.92458 0.96358 0.93528 0.75146 0.81095 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 13.29 55.43 0.74 -24.21 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.21 9.27 -34.44 -0.32 -14.53 15 8 H 0.07 1.67 7.65 -52.49 -0.40 1.27 15 9 C 0.25 6.08 4.83 -5.19 -0.03 6.06 15 10 N -1.10 -21.64 5.99 -11.65 -0.07 -21.71 15 11 S 2.69 47.92 5.70 -107.50 -0.61 47.31 15 12 O -0.97 -16.55 16.88 -57.17 -0.97 -17.51 15 13 O -0.94 -20.12 17.41 -57.17 -1.00 -21.11 15 14 C -0.61 -9.61 5.87 -39.63 -0.23 -9.85 15 15 C 0.04 0.43 9.40 -39.94 -0.38 0.06 15 16 C -0.11 -1.01 9.70 -39.79 -0.39 -1.39 15 17 C 0.06 0.76 6.49 -37.61 -0.24 0.52 15 18 Cl -0.03 -0.26 29.03 -51.86 -1.51 -1.77 15 19 C 0.00 0.02 7.82 -81.25 -0.64 -0.61 15 20 N -0.33 -5.39 12.28 32.72 0.40 -4.99 15 21 O 0.40 7.17 11.67 26.92 0.31 7.49 15 22 N -0.29 -5.78 10.48 31.90 0.33 -5.45 15 23 C 0.07 1.28 6.69 -83.03 -0.56 0.72 15 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 25 H 0.02 0.47 6.73 -51.93 -0.35 0.12 15 26 H 0.05 1.27 7.75 -51.93 -0.40 0.86 15 27 H 0.41 7.24 8.54 -34.47 -0.29 6.94 15 28 H 0.17 1.42 7.18 -52.49 -0.38 1.05 15 29 H 0.16 0.86 8.06 -52.48 -0.42 0.44 15 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -32.39 293.33 -7.21 -39.60 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -1.38 Total: -0.34 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.87 Total: -17.40 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.40 Total: -56.36 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.65 Total: -31.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.61 Total: 47.31 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.77 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.39 -7.21 -39.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814390998.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.415 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds