Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48504 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47031 * 299.99769 * 3 2 1 6 6 H 1.48498 * 109.47289 * 60.00149 * 3 2 1 7 7 C 1.37884 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99479 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99919 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46805 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47349 * 304.99696 * 12 11 10 14 14 O 1.42897 * 109.47678 * 65.00111 * 12 11 10 15 15 C 1.50696 * 109.46948 * 185.00399 * 12 11 10 16 16 C 1.38269 * 119.97723 * 100.00011 * 15 12 11 17 17 C 1.38183 * 120.04895 * 180.02562 * 16 15 12 18 18 C 1.38455 * 119.98435 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.03279 * 179.72746 * 18 17 16 20 20 C 1.38524 * 119.94232 * 359.97438 * 18 17 16 21 21 Br 1.89097 * 120.02360 * 179.97438 * 20 18 17 22 22 C 1.38222 * 119.97018 * 280.01564 * 15 12 11 23 23 H 0.96994 * 119.99964 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47062 * 60.00557 * 9 7 2 25 25 H 1.09002 * 109.47313 * 300.00339 * 9 7 2 26 26 H 1.00900 * 110.99753 * 56.05330 * 10 9 7 27 27 H 1.08998 * 109.47060 * 60.00472 * 11 10 9 28 28 H 1.09001 * 109.47448 * 300.00255 * 11 10 9 29 29 H 0.96701 * 113.99846 * 59.99857 * 14 12 11 30 30 H 1.08002 * 119.96995 * 359.97438 * 16 15 12 31 31 H 1.08001 * 120.00920 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.98712 * 0.03053 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0020 12 6 2.5303 -6.0430 0.0023 13 1 3.2113 -5.9182 -0.8396 14 8 3.2722 -6.0148 1.2233 15 6 1.8160 -7.3641 -0.1211 16 6 1.7474 -8.0006 -1.3466 17 6 1.0923 -9.2118 -1.4616 18 6 0.5045 -9.7889 -0.3487 19 9 -0.1410 -10.9704 -0.4611 20 6 0.5744 -9.1513 0.8790 21 35 -0.2283 -9.9370 2.4003 22 6 1.2295 -7.9384 0.9910 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8411 -3.5483 0.7824 27 1 0.8802 -4.9816 -0.8878 28 1 0.8808 -4.9814 0.8922 29 1 2.7289 -6.1205 2.0162 30 1 2.2056 -7.5503 -2.2148 31 1 1.0388 -9.7082 -2.4193 32 1 1.2830 -7.4400 1.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = -72.117608 kcal Electronic energy + Delta-G solvation = -17838.671601 eV Core-core repulsion = 14566.637597 eV Total energy + Delta-G solvation = -3272.034004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.26106 -39.94704 -37.27250 -34.72371 -32.92117 -32.40250 -31.40064 -29.77650 -28.17567 -25.73231 -23.48573 -22.87409 -21.38433 -21.18835 -18.19176 -17.18488 -16.98429 -16.49586 -16.02665 -15.37467 -15.17456 -14.77599 -14.39543 -13.99182 -13.82094 -13.48058 -13.34938 -13.13586 -12.67190 -12.36913 -11.73144 -11.45937 -11.38118 -11.28971 -10.98795 -10.79808 -10.71589 -10.60962 -10.25324 -9.86816 -9.30509 -9.21072 -8.83648 -8.52227 -7.39627 -6.06711 -4.08812 0.57745 0.73676 1.19253 3.05657 3.29531 3.36899 3.42272 3.75391 4.22190 4.29230 4.40727 4.43415 4.74549 4.81317 5.08190 5.22648 5.29397 5.33074 5.44367 5.53923 5.64262 5.76082 5.90045 6.07532 6.27885 6.34206 7.16243 7.34877 7.56949 7.74007 8.06920 8.32790 8.54871 9.00832 9.56515 11.04462 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002795 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.790349 B =10016.194558 C =10426.420695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.685 5.685 11 C 0.034 3.966 12 C 0.149 3.851 13 H 0.121 0.879 14 O -0.549 6.549 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.145 4.145 18 C 0.120 3.880 19 F -0.127 7.127 20 C -0.127 4.127 21 Br -0.032 7.032 22 C -0.056 4.056 23 H 0.261 0.739 24 H 0.027 0.973 25 H -0.014 1.014 26 H 0.336 0.664 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.370 0.630 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 -23.352 1.951 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.317 5.317 11 C -0.097 4.097 12 C 0.089 3.911 13 H 0.139 0.861 14 O -0.354 6.354 15 C -0.113 4.113 16 C -0.081 4.081 17 C -0.164 4.164 18 C 0.099 3.901 19 F -0.105 7.105 20 C -0.208 4.208 21 Br 0.054 6.946 22 C -0.076 4.076 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.004 0.996 26 H 0.154 0.846 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.217 0.783 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.381 -23.471 1.427 23.517 hybrid contribution -0.603 0.723 0.882 1.290 sum -0.221 -22.748 2.308 22.866 Atomic orbital electron populations 1.69968 1.06114 1.26754 1.50935 1.24999 0.94884 0.99446 0.95281 0.86415 0.80107 0.83229 0.77518 1.19576 1.20979 1.21078 1.21217 0.93622 0.90124 1.50312 0.91789 1.19579 0.90580 0.87393 0.95771 1.60626 1.20913 1.00517 1.49615 1.22549 0.95027 0.91231 1.00868 1.21047 0.93245 0.88103 0.88670 0.86108 1.86667 1.37726 1.95722 1.15307 1.20834 0.98865 0.98277 0.93278 1.21093 0.96132 0.93173 0.97725 1.21159 1.00126 0.97225 0.97885 1.17387 0.96296 0.83079 0.93329 1.91550 1.78808 1.43568 1.96567 1.21865 1.07241 0.99401 0.92268 1.96765 1.80545 1.82114 1.35206 1.20770 0.94535 0.92506 0.99792 0.92931 0.95446 0.99603 0.84638 0.90678 0.95917 0.78294 0.83705 0.83615 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 4.97 5.44 -4.98 -0.03 4.94 16 10 N -0.69 -14.07 6.49 -115.06 -0.75 -14.82 16 11 C 0.03 0.54 5.34 -3.82 -0.02 0.52 16 12 C 0.15 1.88 3.44 -27.88 -0.10 1.78 16 13 H 0.12 1.54 8.00 -51.93 -0.42 1.13 16 14 O -0.55 -7.05 12.71 -35.23 -0.45 -7.50 16 15 C -0.11 -1.20 4.97 -104.62 -0.52 -1.72 16 16 C -0.06 -0.59 9.67 -39.59 -0.38 -0.97 16 17 C -0.14 -1.33 10.03 -39.52 -0.40 -1.72 16 18 C 0.12 1.31 7.27 -39.40 -0.29 1.02 16 19 F -0.13 -1.44 16.73 2.25 0.04 -1.40 16 20 C -0.13 -1.41 6.23 -39.45 -0.25 -1.65 16 21 Br -0.03 -0.33 33.28 -68.01 -2.26 -2.60 16 22 C -0.06 -0.60 9.06 -39.56 -0.36 -0.95 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 25 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 26 H 0.34 6.77 8.28 -39.29 -0.33 6.44 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.37 3.62 7.50 45.56 0.34 3.96 16 30 H 0.15 1.08 8.04 -52.49 -0.42 0.66 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.28 6.78 -52.49 -0.36 0.92 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -30.82 304.93 -8.70 -39.52 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -2.84 Total: 3.64 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.75 Total: -12.04 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.01 Total: -40.71 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.45 Total: -7.50 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.26 Total: -2.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.82 -8.70 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.601 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds