Wall clock time and date at job start Tue Mar 31 2020 11:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48504 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47031 * 299.99769 * 3 2 1 6 6 H 1.48498 * 109.47289 * 60.00149 * 3 2 1 7 7 C 1.37884 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99479 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99919 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46805 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47349 * 304.99696 * 12 11 10 14 14 O 1.42897 * 109.47678 * 65.00111 * 12 11 10 15 15 C 1.50696 * 109.46948 * 185.00399 * 12 11 10 16 16 C 1.38269 * 119.97723 * 100.00011 * 15 12 11 17 17 C 1.38183 * 120.04895 * 180.02562 * 16 15 12 18 18 C 1.38455 * 119.98435 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.03279 * 179.72746 * 18 17 16 20 20 C 1.38524 * 119.94232 * 359.97438 * 18 17 16 21 21 Br 1.89097 * 120.02360 * 179.97438 * 20 18 17 22 22 C 1.38222 * 119.97018 * 280.01564 * 15 12 11 23 23 H 0.96994 * 119.99964 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47062 * 60.00557 * 9 7 2 25 25 H 1.09002 * 109.47313 * 300.00339 * 9 7 2 26 26 H 1.00900 * 110.99753 * 56.05330 * 10 9 7 27 27 H 1.08998 * 109.47060 * 60.00472 * 11 10 9 28 28 H 1.09001 * 109.47448 * 300.00255 * 11 10 9 29 29 H 0.96701 * 113.99846 * 59.99857 * 14 12 11 30 30 H 1.08002 * 119.96995 * 359.97438 * 16 15 12 31 31 H 1.08001 * 120.00920 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.98712 * 0.03053 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5054 -4.9070 0.0020 12 6 2.5303 -6.0430 0.0023 13 1 3.2113 -5.9182 -0.8396 14 8 3.2722 -6.0148 1.2233 15 6 1.8160 -7.3641 -0.1211 16 6 1.7474 -8.0006 -1.3466 17 6 1.0923 -9.2118 -1.4616 18 6 0.5045 -9.7889 -0.3487 19 9 -0.1410 -10.9704 -0.4611 20 6 0.5744 -9.1513 0.8790 21 35 -0.2283 -9.9370 2.4003 22 6 1.2295 -7.9384 0.9910 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8411 -3.5483 0.7824 27 1 0.8802 -4.9816 -0.8878 28 1 0.8808 -4.9814 0.8922 29 1 2.7289 -6.1205 2.0162 30 1 2.2056 -7.5503 -2.2148 31 1 1.0388 -9.7082 -2.4193 32 1 1.2830 -7.4400 1.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:53 Heat of formation + Delta-G solvation = -93.554308 kcal Electronic energy + Delta-G solvation = -17839.601166 eV Core-core repulsion = 14566.637597 eV Total energy + Delta-G solvation = -3272.963569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.10059 -40.81762 -38.35132 -36.38109 -34.41463 -33.67752 -32.36147 -30.65120 -29.68662 -27.32708 -24.60179 -23.95438 -23.14188 -22.17911 -19.01717 -18.68939 -17.97206 -17.86294 -16.95455 -16.85344 -16.44827 -16.13639 -15.53712 -15.14132 -14.90738 -14.67544 -14.45509 -14.20468 -14.07596 -13.65759 -13.36902 -13.03086 -12.64273 -12.62772 -12.38859 -12.19695 -12.06979 -11.86663 -11.50127 -11.40160 -10.99909 -10.66730 -10.07416 -9.71385 -9.13580 -8.22480 -6.33350 -0.23343 -0.04148 0.38121 1.42708 1.43279 1.57333 2.25374 2.41226 2.96108 3.11338 3.24087 3.46628 3.53620 3.84063 3.98617 4.07044 4.17603 4.20389 4.46322 4.69478 4.72380 4.74983 4.89102 4.98844 5.09295 5.26275 5.34788 5.57545 5.62036 6.01798 6.42511 6.66984 6.74108 6.90003 7.37922 8.89221 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002795 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.790349 B =10016.194558 C =10426.420695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.034 3.966 12 C 0.166 3.834 13 H 0.123 0.877 14 O -0.560 6.560 15 C -0.119 4.119 16 C -0.059 4.059 17 C -0.138 4.138 18 C 0.109 3.891 19 F -0.132 7.132 20 C -0.141 4.141 21 Br -0.033 7.033 22 C -0.060 4.060 23 H 0.265 0.735 24 H 0.001 0.999 25 H -0.039 1.039 26 H 0.340 0.660 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.382 0.618 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -23.583 1.463 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.315 5.315 11 C -0.096 4.096 12 C 0.107 3.893 13 H 0.141 0.859 14 O -0.367 6.367 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.157 4.157 18 C 0.087 3.913 19 F -0.110 7.110 20 C -0.221 4.221 21 Br 0.053 6.947 22 C -0.080 4.080 23 H 0.074 0.926 24 H 0.019 0.981 25 H -0.021 1.021 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.232 0.768 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.477 -23.731 0.950 23.796 hybrid contribution -0.974 0.714 1.039 1.593 sum 0.504 -23.017 1.989 23.108 Atomic orbital electron populations 1.70088 1.07794 1.27948 1.51638 1.25944 0.95770 1.03382 0.94597 0.85288 0.79000 0.78320 0.77717 1.18599 1.20399 1.20388 1.21583 0.93862 0.91424 1.50432 0.91707 1.19225 0.90639 0.88935 0.93275 1.60471 1.20143 1.01068 1.49801 1.22643 0.95932 0.90275 1.00750 1.20752 0.92178 0.87556 0.88837 0.85904 1.86637 1.38387 1.95707 1.15967 1.20672 0.99549 0.97685 0.94150 1.21379 0.95460 0.93033 0.97852 1.21441 0.98914 0.96915 0.98445 1.17655 0.96644 0.83086 0.93882 1.91536 1.78994 1.43898 1.96607 1.21973 1.07808 0.99773 0.92551 1.96755 1.80594 1.82133 1.35257 1.20889 0.94311 0.92459 1.00298 0.92627 0.98050 1.02136 0.84259 0.91017 0.95789 0.76820 0.81465 0.80996 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -30.18 9.32 25.60 0.24 -29.94 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 10.87 5.44 85.56 0.47 11.34 16 10 N -0.68 -28.03 6.49 -517.93 -3.36 -31.39 16 11 C 0.03 1.07 5.34 86.30 0.46 1.53 16 12 C 0.17 3.95 3.44 29.85 0.10 4.05 16 13 H 0.12 2.89 8.00 -2.39 -0.02 2.87 16 14 O -0.56 -13.54 12.71 -148.98 -1.89 -15.44 16 15 C -0.12 -2.37 4.97 -19.86 -0.10 -2.46 16 16 C -0.06 -0.97 9.67 22.26 0.22 -0.75 16 17 C -0.14 -2.20 10.03 22.31 0.22 -1.98 16 18 C 0.11 2.19 7.27 22.39 0.16 2.36 16 19 F -0.13 -2.84 16.73 44.97 0.75 -2.08 16 20 C -0.14 -2.95 6.23 22.35 0.14 -2.81 16 21 Br -0.03 -0.67 33.28 -20.37 -0.68 -1.34 16 22 C -0.06 -1.19 9.06 22.28 0.20 -0.99 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 26 H 0.34 13.54 8.28 -89.69 -0.74 12.80 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.38 6.97 7.50 -74.06 -0.56 6.41 16 30 H 0.17 1.96 8.04 -2.91 -0.02 1.93 16 31 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.15 2.56 6.78 -2.91 -0.02 2.54 16 Total: -1.00 -65.61 304.93 -0.43 -66.04 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.13 Total: 13.16 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 2.57 Total: -19.14 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -3.08 Total: -87.06 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.89 Total: -15.44 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.75 Total: -2.08 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.68 Total: -1.34 kcal Total: -65.61 -0.43 -66.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.518 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds