Wall clock time and date at job start Tue Mar 31 2020 11:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48497 * 109.47040 * 270.00429 * 3 2 1 5 5 H 1.48499 * 109.46766 * 30.00053 * 3 2 1 6 6 H 1.48497 * 109.46987 * 150.00165 * 3 2 1 7 7 C 1.37872 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00180 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00074 * 180.02562 * 7 2 1 10 10 S 1.81406 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99596 * 180.02562 * 10 9 7 12 12 C 1.38724 * 120.10569 * 359.97438 * 11 10 9 13 13 C 1.38247 * 119.99820 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.20418 * 0.02562 * 14 13 12 16 16 C 1.38641 * 120.00818 * 359.97438 * 15 14 13 17 17 N 1.40000 * 120.10373 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.50709 * 109.46824 * 179.97438 * 18 17 16 20 20 C 1.31322 * 119.99725 * 124.99797 * 19 18 17 21 21 Cl 1.73601 * 120.00536 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 119.99871 * 180.02562 * 20 19 18 23 23 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47174 * 59.99905 * 9 7 2 25 25 H 1.09004 * 109.47152 * 299.99649 * 9 7 2 26 26 H 1.08007 * 120.00050 * 359.97438 * 12 11 10 27 27 H 1.07996 * 119.90240 * 180.28222 * 13 12 11 28 28 H 1.08004 * 119.89329 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.99813 * 179.97438 * 15 14 13 30 30 H 0.97001 * 120.00243 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47103 * 299.99203 * 18 17 16 32 32 H 1.08999 * 109.47301 * 59.99857 * 18 17 16 33 33 H 1.07995 * 120.00032 * 304.99796 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 16 4.1161 -2.9044 -0.0016 11 6 5.8669 -2.7058 0.0000 12 6 6.4230 -1.4349 0.0016 13 6 7.7969 -1.2816 0.0034 14 6 8.6206 -2.3923 0.0032 15 6 8.0750 -3.6630 0.0006 16 6 6.6982 -3.8264 -0.0012 17 7 6.1437 -5.1119 -0.0044 18 6 7.0187 -6.2869 -0.0052 19 6 6.1790 -7.5385 -0.0081 20 6 6.3560 -8.4457 -0.9409 21 17 7.5566 -8.2032 -2.1711 22 17 5.3884 -9.8870 -0.9447 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6797 -0.8895 26 1 5.7826 -0.5652 0.0013 27 1 8.2282 -0.2915 0.0092 28 1 9.6933 -2.2669 0.0042 29 1 8.7214 -4.5281 0.0000 30 1 5.1803 -5.2246 -0.0053 31 1 7.6491 -6.2699 -0.8942 32 1 7.6465 -6.2731 0.8858 33 1 5.4319 -7.6892 0.7570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849314331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:08 Heat of formation + Delta-G solvation = 11.113729 kcal Electronic energy + Delta-G solvation = -18361.433926 eV Core-core repulsion = 15178.526036 eV Total energy + Delta-G solvation = -3182.907890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27696 -38.66546 -37.65179 -36.97891 -35.27267 -33.92997 -32.17696 -31.26968 -29.97954 -26.65857 -24.79658 -23.80864 -22.37387 -21.45295 -19.36285 -18.56315 -18.10648 -17.56207 -16.99171 -16.41103 -16.03351 -15.76701 -15.22642 -14.98471 -14.93801 -14.64874 -14.51260 -14.36997 -14.31622 -13.52515 -13.11073 -13.00674 -12.71983 -12.54374 -12.42881 -12.28158 -12.15611 -12.13226 -11.93327 -11.63219 -11.05756 -10.94956 -10.87787 -10.47055 -10.18181 -8.83577 -8.41220 -7.88598 -6.51571 0.19042 0.31831 0.42403 0.69942 0.84890 1.28699 1.32126 1.33406 1.43813 1.84811 2.26225 2.60213 2.91610 2.93402 3.77134 3.96104 4.10845 4.25575 4.30551 4.51430 4.54566 4.57128 4.66516 4.68541 4.75630 4.89769 5.01349 5.24234 5.29875 5.48903 5.71790 5.93521 6.01780 6.37773 6.51813 6.64874 7.11600 8.74274 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003253 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.906597 B = 8605.426798 C =10143.029251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.041 0.959 9 C 0.041 3.959 10 S -0.160 6.160 11 C -0.172 4.172 12 C -0.111 4.111 13 C -0.163 4.163 14 C -0.076 4.076 15 C -0.183 4.183 16 C 0.223 3.777 17 N -0.744 5.744 18 C 0.151 3.849 19 C -0.123 4.123 20 C -0.033 4.033 21 Cl -0.034 7.034 22 Cl -0.034 7.034 23 H 0.274 0.726 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.400 0.600 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.554 -14.588 -0.471 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.060 0.940 9 C -0.107 4.107 10 S 0.083 5.917 11 C -0.288 4.288 12 C -0.135 4.135 13 C -0.185 4.185 14 C -0.097 4.097 15 C -0.207 4.207 16 C 0.115 3.885 17 N -0.375 5.375 18 C 0.028 3.972 19 C -0.143 4.143 20 C -0.087 4.087 21 Cl -0.006 7.006 22 Cl -0.006 7.006 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.125 0.875 27 H 0.157 0.843 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 20.781 -15.750 -0.583 26.082 hybrid contribution -0.339 1.669 -0.137 1.708 sum 20.442 -14.081 -0.720 24.833 Atomic orbital electron populations 1.70000 1.08132 1.28836 1.50421 1.25816 0.95629 1.02990 0.93148 0.85711 0.79592 0.78122 0.79703 1.18588 1.19955 1.17001 1.20608 0.89011 0.94121 1.53352 0.94046 1.21375 0.98367 0.91302 0.99633 1.84860 0.97738 1.16350 1.92761 1.21509 0.96294 0.96294 1.14736 1.21131 0.96988 0.94745 1.00655 1.21088 0.91822 1.00330 1.05236 1.21267 1.00852 0.91070 0.96513 1.20856 0.91307 0.99283 1.09287 1.17428 0.92294 0.83410 0.95375 1.44715 1.08609 1.01580 1.82634 1.20610 0.91954 0.80602 1.04083 1.23316 1.00395 0.93526 0.97111 1.24154 0.95958 0.93379 0.95194 1.98425 1.53291 1.95121 1.53743 1.98444 1.67881 1.36574 1.97665 0.91708 0.93897 0.94168 0.87452 0.84342 0.82588 0.83198 0.76457 0.89970 0.88276 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 2 C 0.02 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.95 42.75 27.47 68.60 1.88 44.63 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.53 -30.94 9.68 25.60 0.25 -30.69 16 8 H 0.04 2.68 7.96 -2.91 -0.02 2.66 16 9 C 0.04 2.00 3.16 71.24 0.23 2.23 16 10 S -0.16 -6.78 20.37 -56.49 -1.15 -7.93 16 11 C -0.17 -6.07 6.12 22.70 0.14 -5.93 16 12 C -0.11 -3.71 9.36 22.39 0.21 -3.50 16 13 C -0.16 -4.20 10.04 22.28 0.22 -3.98 16 14 C -0.08 -1.60 10.04 22.29 0.22 -1.38 16 15 C -0.18 -4.09 9.31 22.38 0.21 -3.88 16 16 C 0.22 6.38 6.66 38.25 0.25 6.64 16 17 N -0.74 -18.38 5.68 -342.52 -1.94 -20.33 16 18 C 0.15 2.52 5.21 85.64 0.45 2.97 16 19 C -0.12 -1.90 9.37 25.33 0.24 -1.67 16 20 C -0.03 -0.53 6.97 67.47 0.47 -0.06 16 21 Cl -0.03 -0.55 26.92 -2.72 -0.07 -0.63 16 22 Cl -0.03 -0.56 29.06 -2.72 -0.08 -0.64 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.04 2.04 6.81 -2.39 -0.02 2.02 16 25 H 0.04 1.89 7.17 -2.39 -0.02 1.88 16 26 H 0.11 3.86 5.88 -2.91 -0.02 3.84 16 27 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.15 2.38 6.74 -2.91 -0.02 2.36 16 30 H 0.40 11.02 7.01 -92.71 -0.65 10.37 16 31 H 0.08 1.33 5.82 -2.39 -0.01 1.32 16 32 H 0.10 1.32 7.95 -2.39 -0.02 1.30 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.10 323.42 2.73 -63.37 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.45 Total: 16.03 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.35 Total: -37.36 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.64 Total: -77.47 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Atomic # 16 Polarization: -6.78 SS G_CDS: -1.15 Total: -7.93 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.15 Total: -1.26 kcal Total: -66.10 2.73 -63.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.484 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds