Wall clock time and date at job start Tue Mar 31 2020 11:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75890 * 125.20113 * 2 1 4 4 C 1.75881 * 90.97441 * 180.11420 * 3 2 1 5 5 C 1.50698 * 125.19555 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47393 * 269.70062 * 5 4 3 7 7 C 1.46900 * 110.99472 * 293.95101 * 6 5 4 8 8 C 1.46899 * 111.00455 * 170.00090 * 6 5 4 9 9 H 1.08997 * 109.47258 * 59.99566 * 8 6 5 10 10 C 1.53004 * 109.46825 * 299.99648 * 8 6 5 11 11 C 1.50695 * 109.47153 * 179.97438 * 8 6 5 12 12 H 1.08001 * 120.00047 * 5.42532 * 11 8 6 13 13 C 1.37882 * 119.99985 * 185.43507 * 11 8 6 14 14 N 1.31519 * 119.99672 * 8.32407 * 13 11 8 15 15 Si 1.86797 * 119.99863 * 188.33046 * 13 11 8 16 16 H 1.48501 * 109.47243 * 84.98574 * 15 13 11 17 17 H 1.48507 * 109.46766 * 204.98193 * 15 13 11 18 18 H 1.48491 * 109.47366 * 324.98027 * 15 13 11 19 19 C 1.33394 * 109.60800 * 359.65949 * 4 3 2 20 20 C 1.33432 * 125.20385 * 179.74014 * 2 1 3 21 21 Br 1.89100 * 122.54266 * 359.97438 * 20 2 1 22 22 H 1.08994 * 109.46937 * 270.26266 * 1 2 3 23 23 H 1.09005 * 109.46892 * 30.26284 * 1 2 3 24 24 H 1.09003 * 109.47440 * 150.25801 * 1 2 3 25 25 H 1.09002 * 109.47493 * 149.69389 * 5 4 3 26 26 H 1.09002 * 109.47076 * 29.69738 * 5 4 3 27 27 H 1.08994 * 109.47511 * 296.04721 * 7 6 5 28 28 H 1.08999 * 109.47220 * 56.04481 * 7 6 5 29 29 H 1.09000 * 109.47039 * 176.04634 * 7 6 5 30 30 H 1.08998 * 109.47020 * 306.99831 * 10 8 6 31 31 H 1.09003 * 109.47142 * 66.99403 * 10 8 6 32 32 H 1.08998 * 109.47094 * 186.99679 * 10 8 6 33 33 H 0.97000 * 119.99392 * 180.02562 * 14 13 11 34 34 H 1.08001 * 122.54143 * 180.28093 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4373 0.0000 4 6 3.9751 0.4480 -0.0035 5 6 5.3860 0.9777 -0.0057 6 7 5.8444 1.1441 -1.3915 7 6 5.9578 -0.1549 -2.0679 8 6 7.1171 1.8761 -1.4407 9 1 7.8755 1.3240 -0.8856 10 6 6.9338 3.2603 -0.8151 11 6 7.5549 2.0264 -2.8748 12 1 6.9077 1.6975 -3.6743 13 6 8.7819 2.5838 -3.1662 14 7 9.6373 2.8332 -2.1987 15 14 9.2293 2.9847 -4.9349 16 1 8.6956 4.3246 -5.2889 17 1 10.7069 2.9853 -5.0838 18 1 8.6412 1.9632 -5.8380 19 6 3.6385 -0.8428 0.0030 20 6 2.2762 -1.0903 0.0049 21 35 1.5601 -2.8404 0.0136 22 1 -0.3633 0.0047 1.0276 23 1 -0.3633 0.8877 -0.5179 24 1 -0.3634 -0.8923 -0.5098 25 1 6.0390 0.2744 0.5111 26 1 5.4133 1.9407 0.5041 27 1 6.7248 -0.7543 -1.5776 28 1 5.0017 -0.6759 -2.0167 29 1 6.2309 0.0015 -3.1115 30 1 6.0920 3.7648 -1.2894 31 1 6.7390 3.1538 0.2521 32 1 7.8397 3.8483 -0.9622 33 1 10.5003 3.2256 -2.4037 34 1 4.3729 -1.6347 0.0068 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876691063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:28 Heat of formation + Delta-G solvation = 19.326548 kcal Electronic energy + Delta-G solvation = -16579.549734 eV Core-core repulsion = 13877.694223 eV Total energy + Delta-G solvation = -2701.855512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.71383 -38.31757 -35.02083 -33.33593 -31.65935 -31.14147 -29.65592 -27.18742 -26.12880 -24.55111 -23.33205 -21.34796 -19.73349 -18.38357 -18.05100 -17.00842 -16.27471 -15.96225 -15.78604 -15.10888 -14.98550 -14.39491 -14.18581 -13.93040 -13.58360 -13.41273 -13.22162 -12.95316 -12.87089 -12.59099 -12.53891 -12.39245 -12.15704 -12.01293 -11.79484 -11.71901 -11.59253 -11.16717 -10.89777 -10.54410 -9.52095 -9.33354 -8.99013 -8.14537 -6.22441 -0.13942 0.18265 0.74513 1.32563 1.42096 1.43165 1.44521 1.52968 2.42907 3.16816 3.39953 3.74632 3.94964 4.18602 4.28303 4.50203 4.62298 4.66246 4.70499 4.71971 4.82850 4.94067 4.98076 5.02074 5.05049 5.13953 5.22711 5.29249 5.44327 5.69636 5.71897 6.17666 6.31750 6.66471 6.91642 7.45746 8.93983 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.003460 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.443976 B = 8091.507352 C = 8538.253331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.154 4.154 3 S 0.167 5.833 4 C -0.164 4.164 5 C 0.119 3.881 6 N -0.536 5.536 7 C 0.044 3.956 8 C 0.215 3.785 9 H -0.029 1.029 10 C -0.117 4.117 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.016 3.984 14 N -0.921 5.921 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.124 4.124 20 C -0.121 4.121 21 Br -0.026 7.026 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.007 0.993 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.262 0.738 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.735 -8.695 6.849 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.275 4.275 3 S 0.431 5.569 4 C -0.282 4.282 5 C -0.011 4.011 6 N -0.261 5.261 7 C -0.104 4.104 8 C 0.109 3.891 9 H -0.011 1.011 10 C -0.175 4.175 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.183 4.183 14 N -0.560 5.560 15 Si 0.781 3.219 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.155 4.155 20 C -0.213 4.213 21 Br 0.058 6.942 22 H 0.114 0.886 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.026 0.974 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.420 -7.422 6.633 22.717 hybrid contribution 2.018 -1.348 -0.416 2.462 sum -18.403 -8.771 6.217 21.313 Atomic orbital electron populations 1.20603 0.84976 1.04637 1.04483 1.24914 1.01885 0.94763 1.05927 1.84287 0.94499 1.07189 1.70961 1.24284 0.99060 0.96358 1.08541 1.20541 0.88937 1.00344 0.91241 1.62115 1.31748 1.18896 1.13331 1.22160 0.99225 0.89596 0.99429 1.19085 0.83802 0.90760 0.95492 1.01113 1.21616 1.00235 0.98741 0.96909 1.21339 1.01594 1.40321 0.92423 0.92409 1.25659 0.95974 0.95734 1.00979 1.70077 1.07856 1.44476 1.33612 0.85615 0.76898 0.78885 0.80520 1.19989 1.21114 1.19431 1.19895 0.94788 0.96324 1.04477 1.20596 0.94455 0.92183 1.14068 1.96617 1.84674 1.15012 1.97902 0.88591 0.89478 0.89468 0.93939 0.89651 0.97420 0.91281 0.92297 0.94014 0.94719 0.93639 0.92914 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.02 71.24 0.71 -0.65 16 2 C -0.15 -3.47 6.51 24.60 0.16 -3.31 16 3 S 0.17 4.26 23.31 -56.49 -1.32 2.95 16 4 C -0.16 -4.95 5.44 24.59 0.13 -4.82 16 5 C 0.12 4.20 5.27 85.56 0.45 4.65 16 6 N -0.54 -22.72 4.61 -906.05 -4.18 -26.91 16 7 C 0.04 1.77 9.00 127.69 1.15 2.92 16 8 C 0.22 10.82 1.93 44.17 0.09 10.90 16 9 H -0.03 -1.62 8.10 -2.39 -0.02 -1.64 16 10 C -0.12 -5.51 8.67 71.98 0.62 -4.88 16 11 C -0.52 -28.31 7.72 25.60 0.20 -28.11 16 12 H 0.06 3.16 6.63 -2.91 -0.02 3.14 16 13 C 0.02 0.86 5.16 84.66 0.44 1.29 16 14 N -0.92 -52.99 12.11 21.45 0.26 -52.73 16 15 Si 0.96 43.55 29.55 68.60 2.03 45.58 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C -0.12 -3.46 8.36 21.23 0.18 -3.28 16 20 C -0.12 -3.01 6.17 21.23 0.13 -2.88 16 21 Br -0.03 -0.54 32.71 -20.37 -0.67 -1.20 16 22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.09 1.28 7.31 -2.39 -0.02 1.26 16 25 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 26 H 0.09 2.99 5.98 -2.39 -0.01 2.97 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 2.42 6.07 -2.39 -0.01 2.40 16 29 H 0.06 2.54 6.33 -2.39 -0.02 2.53 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.42 6.58 -2.39 -0.02 1.41 16 32 H 0.04 2.36 6.72 -2.39 -0.02 2.35 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.14 3.89 8.05 -2.91 -0.02 3.87 16 Total: -1.00 -59.04 308.65 1.48 -57.56 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.10 Total: 2.92 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.26 Total: -28.17 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -3.92 Total: -79.63 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.32 Total: 2.95 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.67 Total: -1.20 kcal Total: -59.04 1.48 -57.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.886 kcal (2) G-P(sol) polarization free energy of solvation -59.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds