Wall clock time and date at job start Tue Mar 31 2020 11:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75877 * 125.20016 * 2 1 4 4 C 1.75878 * 90.97778 * 180.11225 * 3 2 1 5 5 C 1.50706 * 125.19702 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47293 * 269.69843 * 5 4 3 7 7 C 1.46907 * 110.99805 * 293.95211 * 6 5 4 8 8 C 1.46899 * 111.00152 * 170.00150 * 6 5 4 9 9 H 1.09002 * 109.47043 * 309.99859 * 8 6 5 10 10 C 1.53002 * 109.47394 * 69.99914 * 8 6 5 11 11 C 1.50703 * 109.47107 * 189.99879 * 8 6 5 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 6 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 6 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47116 * 59.99536 * 15 13 11 17 17 H 1.48500 * 109.46585 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46730 * 299.99515 * 15 13 11 19 19 C 1.33390 * 109.60345 * 359.65642 * 4 3 2 20 20 C 1.33426 * 125.20053 * 179.73698 * 2 1 3 21 21 Br 1.89097 * 122.55096 * 359.97438 * 20 2 1 22 22 H 1.08998 * 109.47449 * 270.26472 * 1 2 3 23 23 H 1.09008 * 109.47019 * 30.26617 * 1 2 3 24 24 H 1.08998 * 109.46973 * 150.26082 * 1 2 3 25 25 H 1.09006 * 109.46918 * 149.69443 * 5 4 3 26 26 H 1.09000 * 109.46886 * 29.69647 * 5 4 3 27 27 H 1.08995 * 109.47407 * 296.04618 * 7 6 5 28 28 H 1.09006 * 109.46770 * 56.04664 * 7 6 5 29 29 H 1.09003 * 109.46848 * 176.04346 * 7 6 5 30 30 H 1.09002 * 109.47075 * 59.99404 * 10 8 6 31 31 H 1.08996 * 109.47407 * 180.02562 * 10 8 6 32 32 H 1.09000 * 109.46986 * 300.00133 * 10 8 6 33 33 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 34 34 H 1.08002 * 122.54154 * 180.28376 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4372 0.0000 4 6 3.9751 0.4480 -0.0034 5 6 5.3860 0.9778 -0.0057 6 7 5.8444 1.1442 -1.3913 7 6 5.9579 -0.1549 -2.0678 8 6 7.1171 1.8762 -1.4405 9 1 7.0375 2.7838 -0.8421 10 6 8.2351 0.9935 -0.8820 11 6 7.4315 2.2418 -2.8683 12 1 6.7538 1.9582 -3.6600 13 6 8.5847 2.9372 -3.1639 14 7 9.4101 3.2820 -2.1999 15 14 8.9740 3.3910 -4.9337 16 1 7.8891 4.2484 -5.4750 17 1 10.2606 4.1309 -4.9833 18 1 9.0815 2.1548 -5.7494 19 6 3.6385 -0.8427 0.0032 20 6 2.2761 -1.0903 0.0050 21 35 1.5602 -2.8404 0.0138 22 1 -0.3634 0.0047 1.0276 23 1 -0.3633 0.8877 -0.5180 24 1 -0.3633 -0.8923 -0.5098 25 1 6.0390 0.2744 0.5112 26 1 5.4132 1.9408 0.5041 27 1 6.7249 -0.7542 -1.5774 28 1 5.0018 -0.6759 -2.0166 29 1 6.2309 0.0016 -3.1114 30 1 8.3146 0.0858 -1.4804 31 1 9.1793 1.5368 -0.9181 32 1 8.0077 0.7291 0.1507 33 1 10.2216 3.7710 -2.4079 34 1 4.3728 -1.6346 0.0071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876691064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:35 Heat of formation + Delta-G solvation = 36.231879 kcal Electronic energy + Delta-G solvation = -16600.405594 eV Core-core repulsion = 13899.283153 eV Total energy + Delta-G solvation = -2701.122441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.49561 -36.95187 -33.28280 -31.99622 -30.72137 -29.11332 -27.68021 -25.43304 -25.24773 -23.34315 -22.02496 -19.39773 -18.54844 -16.99664 -16.13887 -15.40640 -14.99537 -14.50039 -14.08967 -13.75948 -13.68266 -13.19134 -12.77894 -12.53061 -12.28860 -12.21743 -11.66455 -11.48600 -11.09969 -11.04933 -10.83495 -10.77941 -10.62326 -10.56310 -10.48459 -10.20902 -10.06598 -9.87388 -8.95716 -8.42473 -8.39427 -8.27887 -7.23100 -6.02700 -4.06466 0.93904 1.19726 1.85557 2.35955 2.54491 3.32335 3.36457 3.39786 4.40547 4.71250 4.96583 5.10880 5.25900 5.30504 5.37768 5.55661 5.62523 5.81615 5.95506 6.04874 6.19251 6.21784 6.33471 6.41861 6.63418 6.78311 6.86421 7.05957 7.38976 7.67277 7.80490 8.06505 8.32604 8.53120 8.98930 9.58572 11.04350 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.003421 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.483538 B = 8182.180026 C = 8453.478447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.172 4.172 3 S 0.160 5.840 4 C -0.134 4.134 5 C 0.116 3.884 6 N -0.528 5.528 7 C 0.031 3.969 8 C 0.211 3.789 9 H 0.039 0.961 10 C -0.173 4.173 11 C -0.498 4.498 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.132 4.132 20 C -0.099 4.099 21 Br -0.043 7.043 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.020 0.980 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.006 0.994 33 H 0.261 0.739 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 -9.820 7.057 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.292 4.292 3 S 0.424 5.576 4 C -0.253 4.253 5 C -0.013 4.013 6 N -0.252 5.252 7 C -0.118 4.118 8 C 0.106 3.894 9 H 0.057 0.943 10 C -0.232 4.232 11 C -0.537 4.537 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.162 4.162 20 C -0.191 4.191 21 Br 0.040 6.960 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.530 -8.503 6.831 20.647 hybrid contribution 1.472 -1.398 -0.536 2.100 sum -16.058 -9.902 6.296 19.888 Atomic orbital electron populations 1.20425 0.87381 1.03600 1.03003 1.24475 1.00448 0.95745 1.08543 1.84380 0.95310 1.06904 1.71012 1.24587 0.99563 0.95519 1.05660 1.20576 0.87368 1.00022 0.93377 1.62409 1.33570 1.18437 1.10787 1.22303 0.98585 0.90470 1.00420 1.19347 0.81312 0.91451 0.97327 0.94298 1.22422 1.05138 1.00215 0.95472 1.21039 1.05478 1.35007 0.92160 0.91977 1.24916 0.96149 0.95849 0.97317 1.69870 1.12365 1.39716 1.31517 0.86570 0.77451 0.78568 0.84880 1.20218 1.21397 1.20360 1.19785 0.93940 0.96684 1.05834 1.20513 0.94823 0.90840 1.12951 1.96605 1.85120 1.16380 1.97891 0.90426 0.90886 0.90171 0.93292 0.90192 0.96168 0.93524 0.90887 0.94810 0.89220 0.97485 0.92929 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.02 36.01 0.36 -0.45 16 2 C -0.17 -2.16 6.51 -35.99 -0.23 -2.39 16 3 S 0.16 2.20 23.31 -107.50 -2.51 -0.31 16 4 C -0.13 -2.09 5.44 -36.00 -0.20 -2.29 16 5 C 0.12 2.06 5.03 -4.98 -0.03 2.04 16 6 N -0.53 -11.09 4.69 -237.72 -1.12 -12.20 16 7 C 0.03 0.60 8.57 60.07 0.51 1.11 16 8 C 0.21 5.18 2.31 -68.86 -0.16 5.02 16 9 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 10 C -0.17 -4.08 8.22 37.16 0.31 -3.77 16 11 C -0.50 -13.42 7.97 -34.44 -0.27 -13.70 16 12 H 0.06 1.69 7.10 -52.49 -0.37 1.32 16 13 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 14 N -0.90 -25.11 11.32 55.43 0.63 -24.48 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.13 -1.92 8.36 -41.19 -0.34 -2.27 16 20 C -0.10 -1.33 6.17 -41.18 -0.25 -1.58 16 21 Br -0.04 -0.50 32.71 -68.01 -2.22 -2.73 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.08 0.73 7.31 -51.93 -0.38 0.35 16 25 H 0.05 0.85 7.06 -51.93 -0.37 0.49 16 26 H 0.08 1.41 7.93 -51.93 -0.41 0.99 16 27 H 0.02 0.39 6.21 -51.93 -0.32 0.06 16 28 H 0.05 0.82 6.07 -51.93 -0.32 0.51 16 29 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 30 H 0.03 0.77 6.33 -51.93 -0.33 0.44 16 31 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 32 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.14 2.01 8.05 -52.49 -0.42 1.58 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -27.48 305.22 -10.38 -37.86 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.34 Total: -2.13 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.40 Total: -16.78 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.49 Total: -36.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.51 Total: -0.31 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.22 Total: -2.73 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.48 -10.38 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.092 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds