Wall clock time and date at job start Tue Mar 31 2020 11:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75877 * 125.20016 * 2 1 4 4 C 1.75878 * 90.97778 * 180.11225 * 3 2 1 5 5 C 1.50706 * 125.19702 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47293 * 269.69843 * 5 4 3 7 7 C 1.46907 * 110.99805 * 293.95211 * 6 5 4 8 8 C 1.46899 * 111.00152 * 170.00150 * 6 5 4 9 9 H 1.09002 * 109.47043 * 309.99859 * 8 6 5 10 10 C 1.53002 * 109.47394 * 69.99914 * 8 6 5 11 11 C 1.50703 * 109.47107 * 189.99879 * 8 6 5 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 6 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 6 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47116 * 59.99536 * 15 13 11 17 17 H 1.48500 * 109.46585 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46730 * 299.99515 * 15 13 11 19 19 C 1.33390 * 109.60345 * 359.65642 * 4 3 2 20 20 C 1.33426 * 125.20053 * 179.73698 * 2 1 3 21 21 Br 1.89097 * 122.55096 * 359.97438 * 20 2 1 22 22 H 1.08998 * 109.47449 * 270.26472 * 1 2 3 23 23 H 1.09008 * 109.47019 * 30.26617 * 1 2 3 24 24 H 1.08998 * 109.46973 * 150.26082 * 1 2 3 25 25 H 1.09006 * 109.46918 * 149.69443 * 5 4 3 26 26 H 1.09000 * 109.46886 * 29.69647 * 5 4 3 27 27 H 1.08995 * 109.47407 * 296.04618 * 7 6 5 28 28 H 1.09006 * 109.46770 * 56.04664 * 7 6 5 29 29 H 1.09003 * 109.46848 * 176.04346 * 7 6 5 30 30 H 1.09002 * 109.47075 * 59.99404 * 10 8 6 31 31 H 1.08996 * 109.47407 * 180.02562 * 10 8 6 32 32 H 1.09000 * 109.46986 * 300.00133 * 10 8 6 33 33 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 34 34 H 1.08002 * 122.54154 * 180.28376 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4372 0.0000 4 6 3.9751 0.4480 -0.0034 5 6 5.3860 0.9778 -0.0057 6 7 5.8444 1.1442 -1.3913 7 6 5.9579 -0.1549 -2.0678 8 6 7.1171 1.8762 -1.4405 9 1 7.0375 2.7838 -0.8421 10 6 8.2351 0.9935 -0.8820 11 6 7.4315 2.2418 -2.8683 12 1 6.7538 1.9582 -3.6600 13 6 8.5847 2.9372 -3.1639 14 7 9.4101 3.2820 -2.1999 15 14 8.9740 3.3910 -4.9337 16 1 7.8891 4.2484 -5.4750 17 1 10.2606 4.1309 -4.9833 18 1 9.0815 2.1548 -5.7494 19 6 3.6385 -0.8427 0.0032 20 6 2.2761 -1.0903 0.0050 21 35 1.5602 -2.8404 0.0138 22 1 -0.3634 0.0047 1.0276 23 1 -0.3633 0.8877 -0.5180 24 1 -0.3633 -0.8923 -0.5098 25 1 6.0390 0.2744 0.5112 26 1 5.4132 1.9408 0.5041 27 1 6.7249 -0.7542 -1.5774 28 1 5.0018 -0.6759 -2.0166 29 1 6.2309 0.0016 -3.1114 30 1 8.3146 0.0858 -1.4804 31 1 9.1793 1.5368 -0.9181 32 1 8.0077 0.7291 0.1507 33 1 10.2216 3.7710 -2.4079 34 1 4.3728 -1.6346 0.0071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876691064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:35 Heat of formation + Delta-G solvation = 21.533402 kcal Electronic energy + Delta-G solvation = -16601.042968 eV Core-core repulsion = 13899.283153 eV Total energy + Delta-G solvation = -2701.759815 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -39.77809 -38.43310 -35.01738 -33.38613 -31.66057 -30.74829 -29.16354 -27.28311 -26.75939 -24.66467 -23.32284 -21.15492 -19.67550 -18.32378 -17.93975 -17.08927 -16.25323 -16.20466 -15.36760 -15.20864 -15.02835 -14.45049 -14.23231 -13.82407 -13.65985 -13.26319 -13.23883 -12.89876 -12.75665 -12.70514 -12.58289 -12.37691 -12.19713 -12.01934 -11.80839 -11.71207 -11.58071 -11.17162 -10.94290 -10.48022 -9.52562 -9.34001 -8.89092 -8.09796 -6.20434 -0.13695 0.18079 0.75027 1.32718 1.42981 1.44652 1.45245 1.52882 2.44149 3.19428 3.44328 3.75257 3.95094 4.18997 4.29727 4.52265 4.60615 4.66055 4.70002 4.74170 4.80407 4.88329 4.91705 5.03566 5.12409 5.13977 5.17640 5.29532 5.51125 5.70492 5.78823 6.18721 6.45192 6.67354 6.91443 7.48552 8.95850 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.003421 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.483538 B = 8182.180026 C = 8453.478447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.154 4.154 3 S 0.160 5.840 4 C -0.164 4.164 5 C 0.123 3.877 6 N -0.538 5.538 7 C 0.040 3.960 8 C 0.216 3.784 9 H 0.009 0.991 10 C -0.159 4.159 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.014 3.986 14 N -0.920 5.920 15 Si 0.957 3.043 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.122 4.122 20 C -0.121 4.121 21 Br -0.025 7.025 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.513 -10.730 6.852 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.275 4.275 3 S 0.424 5.576 4 C -0.282 4.282 5 C -0.006 4.006 6 N -0.262 5.262 7 C -0.108 4.108 8 C 0.109 3.891 9 H 0.027 0.973 10 C -0.218 4.218 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.185 4.185 14 N -0.560 5.560 15 Si 0.783 3.217 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.153 4.153 20 C -0.213 4.213 21 Br 0.059 6.941 22 H 0.114 0.886 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.220 -9.425 6.632 22.410 hybrid contribution 1.875 -1.167 -0.417 2.247 sum -17.345 -10.592 6.215 21.252 Atomic orbital electron populations 1.20601 0.85010 1.04615 1.04471 1.24903 1.01865 0.94727 1.05983 1.84354 0.94807 1.07406 1.71039 1.24303 0.99005 0.96342 1.08572 1.20450 0.88930 0.99981 0.91283 1.62261 1.31550 1.19160 1.13244 1.22211 0.99661 0.89889 0.99083 1.19089 0.83255 0.91044 0.95663 0.97273 1.22215 1.03402 0.99559 0.96672 1.21300 1.05501 1.35177 0.93204 0.92750 1.25640 0.96067 0.95826 1.00961 1.69994 1.12623 1.40175 1.33197 0.85631 0.77225 0.78371 0.80510 1.19924 1.21004 1.19762 1.19893 0.94770 0.96268 1.04384 1.20607 0.94500 0.92172 1.14005 1.96617 1.84701 1.14909 1.97900 0.88599 0.89559 0.89427 0.93078 0.90810 0.95931 0.91560 0.92757 0.94681 0.91914 0.95511 0.92964 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.02 71.24 0.71 -0.68 16 2 C -0.15 -3.51 6.51 24.60 0.16 -3.35 16 3 S 0.16 4.19 23.31 -56.49 -1.32 2.88 16 4 C -0.16 -4.95 5.44 24.59 0.13 -4.82 16 5 C 0.12 4.34 5.03 85.56 0.43 4.77 16 6 N -0.54 -22.68 4.69 -906.00 -4.25 -26.93 16 7 C 0.04 1.54 8.57 127.69 1.09 2.63 16 8 C 0.22 10.80 2.31 44.17 0.10 10.90 16 9 H 0.01 0.52 7.93 -2.39 -0.02 0.50 16 10 C -0.16 -7.57 8.22 71.98 0.59 -6.98 16 11 C -0.51 -28.04 7.97 25.60 0.20 -27.83 16 12 H 0.05 2.99 7.10 -2.91 -0.02 2.97 16 13 C 0.01 0.75 5.30 84.65 0.45 1.20 16 14 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 15 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 C -0.12 -3.37 8.36 21.23 0.18 -3.19 16 20 C -0.12 -3.00 6.17 21.23 0.13 -2.87 16 21 Br -0.02 -0.52 32.71 -20.37 -0.67 -1.18 16 22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.09 1.30 7.31 -2.39 -0.02 1.28 16 25 H 0.05 1.76 7.06 -2.38 -0.02 1.74 16 26 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 27 H 0.02 0.85 6.21 -2.39 -0.01 0.83 16 28 H 0.07 2.27 6.07 -2.38 -0.01 2.26 16 29 H 0.05 2.28 6.86 -2.39 -0.02 2.26 16 30 H 0.03 1.61 6.33 -2.39 -0.02 1.59 16 31 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 32 H 0.03 1.12 6.91 -2.39 -0.02 1.10 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.14 3.84 8.05 -2.91 -0.02 3.82 16 Total: -1.00 -58.15 305.22 1.32 -56.82 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.10 Total: 5.16 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 4.19 Total: -30.23 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -4.01 Total: -79.05 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.32 Total: 2.88 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.67 Total: -1.18 kcal Total: -58.15 1.32 -56.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876691064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.355 kcal (2) G-P(sol) polarization free energy of solvation -58.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds