Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48502 * 109.47173 * 269.99991 * 3 2 1 5 5 H 1.48505 * 109.46884 * 29.99709 * 3 2 1 6 6 H 1.48500 * 109.47481 * 149.99711 * 3 2 1 7 7 C 1.37881 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47159 * 180.02562 * 10 9 7 12 12 C 1.46898 * 111.00262 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47167 * 179.97438 * 12 11 10 14 14 C 1.38227 * 120.01075 * 260.02240 * 13 12 11 15 15 C 1.38303 * 120.08373 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 119.94472 * 180.02562 * 15 14 13 17 17 C 1.38373 * 120.10607 * 0.02562 * 15 14 13 18 18 C 1.38287 * 120.02280 * 359.68292 * 17 15 14 19 19 F 1.35099 * 120.04572 * 180.29583 * 18 17 15 20 20 C 1.38617 * 120.00993 * 80.00043 * 13 12 11 21 21 O 1.35963 * 120.05168 * 0.02603 * 20 13 12 22 22 H 0.96997 * 119.99504 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46948 * 60.00224 * 9 7 2 24 24 H 1.09000 * 109.46933 * 300.00064 * 9 7 2 25 25 H 1.09002 * 109.47379 * 60.00072 * 10 9 7 26 26 H 1.09000 * 109.47533 * 299.99887 * 10 9 7 27 27 H 1.00901 * 111.00260 * 56.04342 * 11 10 9 28 28 H 1.09001 * 109.47272 * 60.00036 * 12 11 10 29 29 H 1.08996 * 109.47452 * 299.99559 * 12 11 10 30 30 H 1.07994 * 119.95554 * 359.95519 * 14 13 12 31 31 H 1.08004 * 119.98954 * 179.97438 * 17 15 14 32 32 H 0.96700 * 114.00258 * 90.00073 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 7 5.4905 -2.6366 0.0035 12 6 6.0170 -4.0080 0.0040 13 6 7.5234 -3.9678 0.0046 14 6 8.2205 -4.1569 -1.1739 15 6 9.6031 -4.1198 -1.1752 16 35 10.5527 -4.3784 -2.7899 17 6 10.2924 -3.8938 0.0031 18 6 9.5993 -3.6980 1.1836 19 9 10.2718 -3.4714 2.3332 20 6 8.2104 -3.7407 1.1869 21 8 7.5262 -3.5545 2.3470 22 1 -0.4849 0.8401 -0.0004 23 1 3.8746 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.6585 -3.1510 -0.8875 26 1 3.6579 -3.1498 0.8925 27 1 5.8516 -2.1100 0.7848 28 1 5.6682 -4.5314 -0.8862 29 1 5.6669 -4.5313 0.8937 30 1 7.6849 -4.3342 -2.0948 31 1 11.3721 -3.8656 0.0000 32 1 7.3518 -4.3703 2.8360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883085972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = -66.532349 kcal Electronic energy + Delta-G solvation = -17899.749612 eV Core-core repulsion = 14627.957803 eV Total energy + Delta-G solvation = -3271.791809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.21706 -40.20110 -37.20988 -36.14626 -33.24114 -32.12420 -31.55712 -29.65861 -28.78874 -25.94875 -23.45305 -22.94005 -21.60346 -20.40578 -18.88751 -17.46777 -17.17007 -16.78123 -16.38812 -15.60159 -15.30969 -14.74820 -14.48210 -14.24610 -13.97800 -13.65799 -13.05511 -12.96188 -12.76113 -12.60335 -12.15408 -12.01470 -11.31435 -11.03462 -10.95290 -10.84786 -10.67815 -10.19162 -9.86538 -9.78900 -9.27033 -9.16785 -8.87442 -8.53506 -8.03001 -6.04621 -4.03145 0.45361 0.67381 1.16590 2.89134 3.33985 3.40853 3.46420 3.55192 3.91329 4.20886 4.46882 4.62147 4.67455 4.79233 4.93058 5.24220 5.30275 5.36108 5.49214 5.63627 5.66992 5.93885 6.14026 6.19370 6.23980 6.74301 7.06543 7.20724 7.37240 7.53162 7.70422 7.86381 8.52158 8.98990 9.57909 11.08623 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003117 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.679103 B = 8982.225781 C = 9798.001339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.688 5.688 12 C 0.102 3.898 13 C -0.065 4.065 14 C -0.067 4.067 15 C -0.074 4.074 16 Br -0.036 7.036 17 C -0.118 4.118 18 C 0.080 3.920 19 F -0.127 7.127 20 C 0.096 3.904 21 O -0.479 6.479 22 H 0.263 0.737 23 H 0.014 0.986 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.343 0.657 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.952 -13.118 -1.833 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.319 5.319 12 C -0.027 4.027 13 C -0.067 4.067 14 C -0.087 4.087 15 C -0.154 4.154 16 Br 0.050 6.950 17 C -0.139 4.139 18 C 0.060 3.940 19 F -0.106 7.106 20 C 0.049 3.951 21 O -0.289 6.289 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.161 0.839 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 25.214 -12.433 -3.230 28.298 hybrid contribution 0.107 0.299 1.669 1.699 sum 25.322 -12.134 -1.560 28.122 Atomic orbital electron populations 1.69914 1.06321 1.26947 1.51089 1.25001 0.94728 0.99222 0.94427 0.86743 0.80324 0.83407 0.78610 1.20208 1.21474 1.18951 1.21054 0.89306 0.94523 1.51131 0.91089 1.19546 0.96679 0.91723 0.96844 1.21985 0.83447 1.00332 0.99604 1.60697 1.10166 1.10756 1.50280 1.20761 0.87475 0.92812 1.01690 1.20192 0.97237 0.97806 0.91453 1.21043 0.91451 0.97563 0.98659 1.21507 0.94625 1.07049 0.92195 1.96767 1.74616 1.95790 1.27835 1.20937 1.01167 1.01928 0.89903 1.17869 0.89243 1.04347 0.82584 1.91526 1.80006 1.92020 1.47030 1.18402 0.87895 1.01191 0.87576 1.84921 1.75421 1.35785 1.32802 0.92710 0.96778 0.96046 0.91587 0.95772 0.83922 0.89702 0.94017 0.83530 0.83466 0.74866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.46 5.62 -3.83 -0.02 1.43 16 11 N -0.69 -11.32 6.49 -115.06 -0.75 -12.07 16 12 C 0.10 1.28 5.47 -4.98 -0.03 1.25 16 13 C -0.06 -0.73 5.40 -104.49 -0.56 -1.30 16 14 C -0.07 -0.69 9.40 -39.56 -0.37 -1.06 16 15 C -0.07 -0.73 6.22 -39.51 -0.25 -0.97 16 16 Br -0.04 -0.31 33.70 -68.01 -2.29 -2.61 16 17 C -0.12 -1.14 9.76 -39.51 -0.39 -1.53 16 18 C 0.08 0.88 7.31 -39.30 -0.29 0.59 16 19 F -0.13 -1.48 17.11 2.25 0.04 -1.44 16 20 C 0.10 1.08 6.68 -39.18 -0.26 0.82 16 21 O -0.48 -5.19 12.55 -19.63 -0.25 -5.43 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 24 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.34 5.77 8.67 -39.29 -0.34 5.43 16 28 H 0.08 0.99 8.00 -51.93 -0.42 0.58 16 29 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 30 H 0.15 1.37 8.03 -52.49 -0.42 0.95 16 31 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.39 2.41 9.06 45.56 0.41 2.82 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -31.78 304.37 -8.06 -39.84 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.79 Total: 1.40 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.72 Total: -14.49 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.03 Total: -39.28 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.25 Total: -5.43 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.29 Total: -2.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.78 -8.06 -39.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883085972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.691 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds