Wall clock time and date at job start Tue Mar 31 2020 11:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48502 * 109.47173 * 269.99991 * 3 2 1 5 5 H 1.48505 * 109.46884 * 29.99709 * 3 2 1 6 6 H 1.48500 * 109.47481 * 149.99711 * 3 2 1 7 7 C 1.37881 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00256 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.46905 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47159 * 180.02562 * 10 9 7 12 12 C 1.46898 * 111.00262 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47167 * 179.97438 * 12 11 10 14 14 C 1.38227 * 120.01075 * 260.02240 * 13 12 11 15 15 C 1.38303 * 120.08373 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 119.94472 * 180.02562 * 15 14 13 17 17 C 1.38373 * 120.10607 * 0.02562 * 15 14 13 18 18 C 1.38287 * 120.02280 * 359.68292 * 17 15 14 19 19 F 1.35099 * 120.04572 * 180.29583 * 18 17 15 20 20 C 1.38617 * 120.00993 * 80.00043 * 13 12 11 21 21 O 1.35963 * 120.05168 * 0.02603 * 20 13 12 22 22 H 0.96997 * 119.99504 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46948 * 60.00224 * 9 7 2 24 24 H 1.09000 * 109.46933 * 300.00064 * 9 7 2 25 25 H 1.09002 * 109.47379 * 60.00072 * 10 9 7 26 26 H 1.09000 * 109.47533 * 299.99887 * 10 9 7 27 27 H 1.00901 * 111.00260 * 56.04342 * 11 10 9 28 28 H 1.09001 * 109.47272 * 60.00036 * 12 11 10 29 29 H 1.08996 * 109.47452 * 299.99559 * 12 11 10 30 30 H 1.07994 * 119.95554 * 359.95519 * 14 13 12 31 31 H 1.08004 * 119.98954 * 179.97438 * 17 15 14 32 32 H 0.96700 * 114.00258 * 90.00073 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 7 5.4905 -2.6366 0.0035 12 6 6.0170 -4.0080 0.0040 13 6 7.5234 -3.9678 0.0046 14 6 8.2205 -4.1569 -1.1739 15 6 9.6031 -4.1198 -1.1752 16 35 10.5527 -4.3784 -2.7899 17 6 10.2924 -3.8938 0.0031 18 6 9.5993 -3.6980 1.1836 19 9 10.2718 -3.4714 2.3332 20 6 8.2104 -3.7407 1.1869 21 8 7.5262 -3.5545 2.3470 22 1 -0.4849 0.8401 -0.0004 23 1 3.8746 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.6585 -3.1510 -0.8875 26 1 3.6579 -3.1498 0.8925 27 1 5.8516 -2.1100 0.7848 28 1 5.6682 -4.5314 -0.8862 29 1 5.6669 -4.5313 0.8937 30 1 7.6849 -4.3342 -2.0948 31 1 11.3721 -3.8656 0.0000 32 1 7.3518 -4.3703 2.8360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883085972.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:35 Heat of formation + Delta-G solvation = -89.108072 kcal Electronic energy + Delta-G solvation = -17900.728568 eV Core-core repulsion = 14627.957803 eV Total energy + Delta-G solvation = -3272.770766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.017 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -50.05642 -41.02453 -37.99771 -37.50417 -35.10131 -33.37637 -32.52733 -31.14124 -29.64530 -27.29925 -25.03476 -23.75030 -22.55123 -22.18690 -19.68897 -18.95595 -18.32489 -17.99594 -17.21936 -16.66796 -16.37779 -16.32402 -15.71279 -15.27800 -15.20405 -14.92757 -14.64685 -14.17939 -13.81122 -13.70387 -13.52108 -12.99218 -12.95918 -12.79651 -11.99863 -11.94586 -11.71977 -11.62721 -11.53189 -11.40596 -11.37475 -10.76603 -10.06209 -9.65739 -9.32595 -8.29758 -6.33807 -0.32842 -0.13106 0.42767 1.37676 1.38526 1.51232 2.09219 2.36783 2.78121 3.06134 3.13110 3.31690 3.56656 3.86123 3.93092 4.06975 4.35619 4.44865 4.53825 4.59091 4.70002 4.74480 4.89623 4.97890 5.11156 5.28565 5.44148 5.49587 5.63006 6.08938 6.24780 6.44880 6.57403 6.74557 7.31286 8.86754 Molecular weight = 317.02amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.003117 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.679103 B = 8982.225781 C = 9798.001339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.006 4.006 10 C 0.088 3.912 11 N -0.690 5.690 12 C 0.103 3.897 13 C -0.075 4.075 14 C -0.064 4.064 15 C -0.080 4.080 16 Br -0.025 7.025 17 C -0.108 4.108 18 C 0.067 3.933 19 F -0.134 7.134 20 C 0.098 3.902 21 O -0.494 6.494 22 H 0.267 0.733 23 H 0.015 0.985 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.341 0.659 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.140 -12.929 -2.108 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.044 4.044 10 C -0.040 4.040 11 N -0.321 5.321 12 C -0.025 4.025 13 C -0.077 4.077 14 C -0.085 4.085 15 C -0.159 4.159 16 Br 0.061 6.939 17 C -0.129 4.129 18 C 0.046 3.954 19 F -0.112 7.112 20 C 0.051 3.949 21 O -0.307 6.307 22 H 0.076 0.924 23 H 0.033 0.967 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.159 0.841 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.174 0.826 31 H 0.183 0.817 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 27.422 -12.278 -3.500 30.249 hybrid contribution -0.569 0.130 1.749 1.844 sum 26.853 -12.148 -1.750 29.525 Atomic orbital electron populations 1.70057 1.08204 1.28182 1.52603 1.25957 0.95581 1.03396 0.94078 0.85646 0.79332 0.78383 0.79180 1.19218 1.20939 1.17424 1.21407 0.91840 0.93289 1.50498 0.94589 1.19443 0.93614 0.94722 0.96600 1.21640 0.85682 0.97295 0.99430 1.60591 1.07810 1.13365 1.50306 1.20785 0.88369 0.90660 1.02689 1.20022 0.96339 0.99436 0.91914 1.21183 0.91826 0.96783 0.98682 1.21576 0.94584 1.07034 0.92738 1.96785 1.74280 1.95736 1.27093 1.21141 1.02083 1.00370 0.89318 1.17972 0.89263 1.05363 0.82814 1.91508 1.80078 1.92217 1.47440 1.18469 0.88111 1.00680 0.87684 1.84863 1.75418 1.37510 1.32947 0.92443 0.96671 0.96100 0.91785 0.96076 0.84097 0.88768 0.92956 0.82636 0.81715 0.72691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.01 0.41 5.47 84.66 0.46 0.87 16 3 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.01 -0.28 4.30 29.85 0.13 -0.15 16 10 C 0.09 3.39 5.62 86.30 0.49 3.87 16 11 N -0.69 -21.57 6.49 -517.95 -3.36 -24.93 16 12 C 0.10 2.40 5.47 85.56 0.47 2.87 16 13 C -0.08 -1.55 5.40 -19.78 -0.11 -1.66 16 14 C -0.06 -1.20 9.40 22.28 0.21 -0.99 16 15 C -0.08 -1.39 6.22 22.32 0.14 -1.25 16 16 Br -0.02 -0.38 33.70 -20.37 -0.69 -1.07 16 17 C -0.11 -1.86 9.76 22.31 0.22 -1.64 16 18 C 0.07 1.34 7.31 22.45 0.16 1.50 16 19 F -0.13 -2.92 17.11 44.97 0.77 -2.15 16 20 C 0.10 2.03 6.68 22.53 0.15 2.18 16 21 O -0.49 -9.94 12.55 -93.14 -1.17 -11.11 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 24 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.34 10.91 8.67 -89.69 -0.78 10.13 16 28 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 29 H 0.05 1.12 7.85 -2.39 -0.02 1.10 16 30 H 0.16 2.56 8.03 -2.91 -0.02 2.53 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.41 4.41 9.06 -74.06 -0.67 3.74 16 Total: -1.00 -67.54 304.37 -0.03 -67.57 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.34 Total: 9.14 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 2.57 Total: -24.95 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -3.06 Total: -84.45 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.17 Total: -11.11 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.77 Total: -2.15 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.69 Total: -1.07 kcal Total: -67.54 -0.03 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883085972.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.539 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds